Hi Catherine, As far as I know, it is impossible. See the comments from Martin Morgan and Paul Shannon below https://github.com/Bioconductor/Contributions/issues/1513#issuecomment-644113558
I am maintaining a package for Cytoscape workflow (called transomics2cytoscape). I test it only on the local Desktop environment, not on the bioc builders. RCy3 is also tested only on the local Desktop environment, not on the bioc builders. I think that your fedup package can only be tested locally . (about the functions using Cytoscape.) Kozo -- Kozo Nishida knish...@riken.jp Laboratory for Biologically Inspired Computing 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN RIKEN Center for Biosystems Dynamics Research On Sat, Mar 6, 2021 at 8:36 AM Catherine Ross <catherinem.r...@mail.utoronto.ca> wrote: > > Hi bioc-devel, > > My package contains a function that requires Cytoscape. > For this function to run, I need to have Cytoscape installed and open on my > computer. > https://github.com/rosscm/fedup/blob/main/R/femap.R > > This poses an issue when attempting to test the function since I can’t > control Cytoscape on the bioc builders, so I can’t test the function at all. > > Is it possible to have Cytoscape installed on the builders to be able to run > such tests? > > Catherine > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
