Hello Lori, Thank you for your insight. I figured out it pays to expressly state that those files not be tracked and committed.
I have re-submitted for a new build but I am not getting any notification on the issues page as written out on the Bioconductor website. Is there a reason for this? Regards, Daniel Op ma 1 mrt. 2021 om 19:51 schreef Kern, Lori <lori.sheph...@roswellpark.org >: > Please feel free to also comment directly on your issue for your reviewer > to assist. > > The packages not being available on windows is likely on our end and you > can ignore for now. > > System files should not be git tracked. They should be remove using git > remove and then committed up. > git rm <file> > git commit -a > > Cheers, > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Oluwafemi OLUSOJI <oluwafemi.olus...@uhasselt.be> > *Sent:* Monday, March 1, 2021 12:12 PM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* [Bioc-devel] Error on BiocCheckGitClone and Windows build > > Dear All, > > I recently submitted a package to Bioconductor and got this error message > as part of the reply email. I am not sure what to do about it. > > The two files are git tracked, but they are also named in .Rbuildignore so > I felt they should have been avoided. This is my first experience with > Bioconductor so any help would be appreciated. > > Furthermore, there are errors related to dependencies on the windows build. > Should I worry about these? > > Regards, > Olusoji Oluwafemi Daniel > > ###### Error Related to Windows test build #### > > =============================== > > R CMD BUILD > > =============================== > > * checking for file 'cyanoFilter/DESCRIPTION' ... OK > * preparing 'cyanoFilter': > * checking DESCRIPTION meta-information ... OK > * installing the package to build vignettes > ----------------------------------- > ERROR: dependencies 'flowCore', 'flowDensity' are not available for > package 'cyanoFilter' > * removing > 'C:/Users/pkgbuild/AppData/Local/Temp/Rtmp0gaTHW/Rinst8fd05a8549f/cyanoFilter' > ----------------------------------- > ERROR: package installation failed > > > ####### Error related to git tracked files ##### > > This is BiocCheckGitClone version 1.27.2. BiocCheckGitClone is a work > in progress. Output and severity of issues may change. > * Checking valid files... > * ERROR: System Files found that should not be git tracked: > .Renviron > cyanoFilter.Rproj > * Checking DESCRIPTION... > * Checking if DESCRIPTION is well formatted... > * Checking for valid maintainer... > * Checking CITATION... > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1LkQPtM9Sa__fttKDJlUILOT21ohRFC2hdkBIkJ9PDWzt8AkPi0ku7GyBwX4ptPofJfm1KINoBf81e02U-I-Q5o4xKxog5n7Wr5DFfPpMkn32S7K7ukS-s5WsvWWLENLqexxVoRQ0WwoCGhsdu1lcCMfGr0q3DapJZBTAffl-rmpP0dkVX7yJbv2zO2Hvgr2nIEmKghu2nBekg5_KoH36oiFYspLPGHBlpuXoH1QHCvEI5XFYiqp3NAtNsqswBUQpz75VNeUy4zkWeb9mGtCqgypNfTx90AC6Mfq9ogB_Y-2Nmd5fh57Psufxg7m5bnLi/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
