Please feel free to also comment directly on your issue for your reviewer to
assist.
The packages not being available on windows is likely on our end and you can
ignore for now.
System files should not be git tracked. They should be remove using git remove
and then committed up.
git rm <file>
git commit -a
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Oluwafemi
OLUSOJI <oluwafemi.olus...@uhasselt.be>
Sent: Monday, March 1, 2021 12:12 PM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] Error on BiocCheckGitClone and Windows build
Dear All,
I recently submitted a package to Bioconductor and got this error message
as part of the reply email. I am not sure what to do about it.
The two files are git tracked, but they are also named in .Rbuildignore so
I felt they should have been avoided. This is my first experience with
Bioconductor so any help would be appreciated.
Furthermore, there are errors related to dependencies on the windows build.
Should I worry about these?
Regards,
Olusoji Oluwafemi Daniel
###### Error Related to Windows test build ####
===============================
R CMD BUILD
===============================
* checking for file 'cyanoFilter/DESCRIPTION' ... OK
* preparing 'cyanoFilter':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
-----------------------------------
ERROR: dependencies 'flowCore', 'flowDensity' are not available for
package 'cyanoFilter'
* removing
'C:/Users/pkgbuild/AppData/Local/Temp/Rtmp0gaTHW/Rinst8fd05a8549f/cyanoFilter'
-----------------------------------
ERROR: package installation failed
####### Error related to git tracked files #####
This is BiocCheckGitClone version 1.27.2. BiocCheckGitClone is a work
in progress. Output and severity of issues may change.
* Checking valid files...
* ERROR: System Files found that should not be git tracked:
.Renviron
cyanoFilter.Rproj
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
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