Dear all, I’m a bioinformatics PhD student at UCL who’s recently been trying to develop an R package that has some python dependencies. Specifically, areas of my current pipeline are written in python for speed and any ML has been implemented through sklearn. I was wondering what you would advise as the best practice of integrating python code into Bioconductor/R p packages? E.g. R to python interfaces (such as reticulate) or advising package users to call python scripts independently or re-writing python code in R?
Any advice would be much appreciated. Many thanks in advance, David _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
