The Bioconductor Team is continuing to identify packages that will be
deprecated in the next release to allow for the Bioconductor community to
respond accordingly. The list will be updated monthly.
The current list of deprecated packages for Bioc 3.10 is as follows:
Maintainer requested deprecation:
Software:
SNPchip
GenomeGraphs
HTSanalyzeR
Rchemcpp
charm
Pbase
Experiment Data Package:
charmData
Unresponsive/not-maintained packages:
Software:
dSimer
flipflop
exomePeak
CNPBayes
brainImageR
plateCore
rHVDM
SEPA
condcomp
PathNet
scone
birte
mlm4omics
Experiment Data Package:
facopy.annot
allenpvc
The following Annotation Packages have been user requested deprecated:
MafDb.gnomADex.r2.0.1.GRCh38
MafDb.gnomAD.r2.0.1.GRCh38
MafDb.gnomADex.r2.0.1.hs37d5
MafDb.gnomAD.r2.0.1.hs37d5
They are replaced with
MafDb.gnomADex.r2.1.GRCh38
MafDb.gnomAD.r2.1.GRCh38
MafDb.gnomADex.r2.1.hs37d5
MafDb.gnomAD.r2.1.hs37d5
We will be sending emails out to packages that have been broken across all
platforms for an extended period of time as those are packages that are up for
immediate deprecation if not corrected in a timely fashion.
Thank you
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have received
this message in error, please notify the sender immediately by e-mail and
delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
