Venu, you should really follow Herve's suggestion and use R CMD check --force-multiarch and report back the result.
On Wed, Sep 4, 2019 at 3:32 PM Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > Venu, > If you can produce a minimal example that can reproduce it and open the > issue on rtracklayer github that would be great. Please tag me when you do > so I can keep track of it also @lshep on GitHub > Cheers > > Get Outlook for Android <https://aka.ms/ghei36> > > ------------------------------ > *From:* Venu Thatikonda <thatikond...@gmail.com> > *Sent:* Wednesday, September 4, 2019 3:11:56 PM > *To:* Kasper Daniel Hansen <kasperdanielhan...@gmail.com> > *Cc:* Shepherd, Lori <lori.sheph...@roswellpark.org>; bioc-devel < > bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] 'tokay1' error but passed other OS > > @Daniel, I guess using libBigWig cause even more problems while build, > check commands as this is an non R library. But I'm not sure if this works > out. > > @Lori, Thanks a lot for looking into the error. Interesting to see what's > missing from win32. I will add the .BBSoptions file and bump the version as > suggested. I can create a small example to reproduce the error(?), to open > an issue at rtracklayer, please let me know if that's okay. > > Thank you. > > On Wed, Sep 4, 2019 at 8:50 PM Kasper Daniel Hansen < > kasperdanielhan...@gmail.com> wrote: > >> Thanks >> >> My experience with rtracklayer, bigwig and windows is indeed on some >> windows machines it works, and others it don't. Not sure what the deciding >> factor is, but if it is truly 32 vs 64 bit, that's interesiting >> >> On Wed, Sep 4, 2019 at 1:51 PM Shepherd, Lori < >> lori.sheph...@roswellpark.org> wrote: >> >>> I looked into this more on our builders. The examples run fine on 64 >>> bit. This seems to be caused by a 32-bit Windows specific ERROR from >>> the rtracklayer summary() function for BigWigFile objects. >>> >>> I will open an issue with rtracklayer (when I can come up with a minimal >>> reproducible example) and will post the issue link in your open issue on >>> the Contributions tracker to also monitor. >>> >>> >>> In the meantime you could add a file .BBSoptions that contains the line >>> UnsupportedPlatforms: win32 to get an accurate build report and avoid >>> building on the 32 bit window until the issue is resolved. >>> >>> >>> Lori Shepherd >>> >>> Bioconductor Core Team >>> >>> Roswell Park Cancer Institute >>> >>> Department of Biostatistics & Bioinformatics >>> >>> Elm & Carlton Streets >>> >>> Buffalo, New York 14263 >>> ------------------------------ >>> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of >>> Kasper Daniel Hansen <kasperdanielhan...@gmail.com> >>> *Sent:* Wednesday, September 4, 2019 1:41:28 PM >>> *To:* Venu Thatikonda <thatikond...@gmail.com> >>> *Cc:* bioc-devel <bioc-devel@r-project.org> >>> *Subject:* Re: [Bioc-devel] 'tokay1' error but passed other OS >>> >>> Well, yes, its the status on the build system which matters. >>> >>> In your case it looks like you're doing BigWig parsing. Unfortunately, >>> some >>> of the tools we have for reading BigWig (tracklayer) does not work >>> reliably >>> on Windows - sometimes it works, sometimes it doesn't. My _guess_ is that >>> you're running into this. >>> >>> It would be great to get this fixed, although that is not your package's >>> issue. One possible alternative is >>> https://github.com/dpryan79/libBigWig >>> which Brent Peterson recommends. I don't know if that works on Windows, >>> but >>> at least its not Kent tools. >>> >>> Best, >>> Kasper >>> >>> On Wed, Sep 4, 2019 at 11:45 AM Venu Thatikonda <thatikond...@gmail.com> >>> wrote: >>> >>> > Hi, >>> > >>> > One of my packages during the review is giving an error in bioc windows >>> > system. When I build and check from my side in a windows system, there >>> is >>> > no error. >>> > >>> > It's been over a week, not sure what's happening? Should I do something >>> > from my side? >>> > >>> > Bioc issue: https://github.com/Bioconductor/Contributions/issues/1215 >>> > >>> > Build report: >>> > >>> http://bioconductor.org/spb_reports/ALPS_buildreport_20190827110407.html >>> > >>> > Any update/suggestions would be helpful. >>> > >>> > Thank you. >>> > >>> > -- >>> > Best regards >>> > Venu Thatikonda >>> > https://itsvenu.github.io/ >>> > >>> > [[alternative HTML version deleted]] >>> > >>> > _______________________________________________ >>> > Bioc-devel@r-project.org mailing list >>> > https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> > >>> >>> >>> -- >>> Best, >>> Kasper >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >>> This email message may contain legally privileged and/or confidential >>> information. If you are not the intended recipient(s), or the employee or >>> agent responsible for the delivery of this message to the intended >>> recipient(s), you are hereby notified that any disclosure, copying, >>> distribution, or use of this email message is prohibited. If you have >>> received this message in error, please notify the sender immediately by >>> e-mail and delete this email message from your computer. Thank you. >> >> >> >> -- >> Best, >> Kasper >> > > > -- > Best regards > Venu Thatikonda > https://itsvenu.github.io/ > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Best, Kasper [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
