Also note that since the error is specific to 32-bit Windows, you need to run 'R CMD check --force-multiarch' on your package source tarball in order to reproduce the error. Without the --force-multiarch flag, 'R CMD check' only runs the examples and unit tests for the default arch, which, for 99.99% of Windows users is the 64-bit arch.
H. On 9/4/19 10:51, Shepherd, Lori wrote: > I looked into this more on our builders. The examples run fine on 64 bit. > This seems to be caused by a 32-bit Windows specific ERROR from the > rtracklayer summary() function for BigWigFile objects. > > I will open an issue with rtracklayer (when I can come up with a minimal > reproducible example) and will post the issue link in your open issue on the > Contributions tracker to also monitor. > > > In the meantime you could add a file .BBSoptions that contains the line > UnsupportedPlatforms: win32 to get an accurate build report and avoid > building on the 32 bit window until the issue is resolved. > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Kasper > Daniel Hansen <kasperdanielhan...@gmail.com> > Sent: Wednesday, September 4, 2019 1:41:28 PM > To: Venu Thatikonda <thatikond...@gmail.com> > Cc: bioc-devel <bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] 'tokay1' error but passed other OS > > Well, yes, its the status on the build system which matters. > > In your case it looks like you're doing BigWig parsing. Unfortunately, some > of the tools we have for reading BigWig (tracklayer) does not work reliably > on Windows - sometimes it works, sometimes it doesn't. My _guess_ is that > you're running into this. > > It would be great to get this fixed, although that is not your package's > issue. One possible alternative is > https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dpryan79_libBigWig&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=ujpFo4P7955D90ROfqBqHGmRhZnyQQXnY-dRu0IrCHg&e= > which Brent Peterson recommends. I don't know if that works on Windows, but > at least its not Kent tools. > > Best, > Kasper > > On Wed, Sep 4, 2019 at 11:45 AM Venu Thatikonda <thatikond...@gmail.com> > wrote: > >> Hi, >> >> One of my packages during the review is giving an error in bioc windows >> system. When I build and check from my side in a windows system, there is >> no error. >> >> It's been over a week, not sure what's happening? Should I do something >> from my side? >> >> Bioc issue: >> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_Bioconductor_Contributions_issues_1215&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=auK8S9mNR1K0mIEc6Dyi8jeHYdf6Ijtzg29zCGvjdRw&e= >> >> Build report: >> https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_spb-5Freports_ALPS-5Fbuildreport-5F20190827110407.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=j5hCJlgAQJoMHlJFjSemKuaI7vmqAT90vBkVeTmXP5s&e= >> >> Any update/suggestions would be helpful. >> >> Thank you. >> >> -- >> Best regards >> Venu Thatikonda >> https://urldefense.proofpoint.com/v2/url?u=https-3A__itsvenu.github.io_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=6PbKmuIeMjhsNWRno7PAuILcsvVkhURn29ZwDQkuzCY&e= >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=-lNwAVk3ZfGl_BHMfLr8DZ70ZaK5S86ONSjxMJVtu_s&e= >> > > > -- > Best, > Kasper > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=-lNwAVk3ZfGl_BHMfLr8DZ70ZaK5S86ONSjxMJVtu_s&e= > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=cLVKSXICD34PS8AZqtoyaNp-NKH4jvXvlMjVW8jt_0s&s=-lNwAVk3ZfGl_BHMfLr8DZ70ZaK5S86ONSjxMJVtu_s&e= > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
