Hi Felix, Another temporary glitch introduced in devel by some recent changes to S4Vectors/IRanges, sorry. I think I fixed all the affected packages (was going to fix RNAmodR too but you beat me to it ;-) ). No more splitAsList related issues on today's build report :-)
Cheers, H. On 6/7/19 10:39, Felix Ernst wrote: > Hi > > I have a build error for RNAmodR package, which was just added to the Bioc > git repo and was build for the first time for 3.10. > > https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=nUfzBXboeDlTdiYJYbEd92E8GKN127Qtor_YYjQqzYE&e= > >> No methods found in package �IRanges� for request: �splitAsList� when >> loading �ensembldb� >> Error: object 'splitAsList' is not exported by 'namespace:IRanges' > > I never encountered this particular error during the review process so I am > bit out of my depth. > > If I read this error correctly, it was triggered trying to load the ensembldb > package (which is an indirect dependency). However, ensembldb did build > correctly and splitAsList is as far as I know also exported from IRanges. > IRanges also build correctly. > > Thanks for any advice or a pointer, how I can debug this? > > Best regards, > Felix > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=KrrqI0N9OfEDvqfNppPo2lHmvh53-fJGyDyAz2XvMf8&e= > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
