Perfect. Many thanks! - Alex > On Apr 24, 2018, at 8:25 AM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> > wrote: > > Ok, please check if everything on the master branch is as expected. I’ve > synced it. > > Best > > Nitesh >> On Apr 24, 2018, at 11:20 AM, Alexander Pico <alex.p...@gladstone.ucsf.edu> >> wrote: >> >> It’s ready. Thanks! >> >> - Alex >> >>> On Apr 24, 2018, at 8:02 AM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> >>> wrote: >>> >>> Hi >>> >>> Go ahead and clean your repo. >>> >>> Once that is done, I can sync it. >>> >>> Best, >>> >>> Nitesh >>> >>>> On Apr 22, 2018, at 9:07 PM, Alex Pico <alex.p...@gladstone.ucsf.edu> >>>> wrote: >>>> >>>> In an effort to clear a BiocCheck warning and reduce the size of our code >>>> base from 22MB to 7MB, I’d like to sync our recently cleaned git objects >>>> (using the same BFG tool as described below). I understand that I, as a >>>> maintainer, can not push these sorts of changes to the Bioconductor >>>> server. Can someone help with this sync? >>>> >>>> https://github.com/cytoscape/RCy3 >>>> git.bioconductor.org:packages/RCy3.git >>>> >>>> Thanks! >>>> - Alex >>>> >>>>> On Mar 19, 2018, at 11:29 AM, Turaga, Nitesh >>>>> <nitesh.tur...@roswellpark.org> wrote: >>>>> >>>>> Another note, it is not be possible for you to push back to the >>>>> Bioconductor server once the repo is cleaned. Please do this on your >>>>> Github repo, and let me know. I will sync the cleaned repo. >>>>> >>>>> To further explain, you need force push privileges to Bioconductor to >>>>> make this happen, and these are not given to maintainers. Hence the added >>>>> step required for me to sync these repos. >>>>> >>>>> I’m also forwarding to Bioc-devel, since this is a particularly good >>>>> question to share with the community at large. We’ve been getting a few >>>>> questions pertaining this exact problem. >>>>> >>>>> Best >>>>> >>>>>> On Mar 19, 2018, at 2:24 PM, ni41435_ca <nitesh.tur...@roswellpark.org> >>>>>> wrote: >>>>>> >>>>>> Hi Vincent, >>>>>> >>>>>> Yes it is possible to prune this. Please check BFG cleaner, it works >>>>>> well. >>>>>> >>>>>> https://rtyley.github.io/bfg-repo-cleaner/ >>>>>> >>>>>> That would be the easiest way to go about it. If you need more help, >>>>>> please feel free to ask. BFG cleaner is pretty well explained in its >>>>>> documentation. >>>>>> >>>>>> Best, >>>>>> >>>>>> Nitesh >>>>>> >>>>>>> On Mar 19, 2018, at 2:22 PM, Vincent Carey <st...@channing.harvard.edu> >>>>>>> wrote: >>>>>>> >>>>>>> Hi -- restfulSE is hard to check out the first time because >>>>>>> so many large objects were in there, and then deleted. >>>>>>> >>>>>>> Is it allowable to prune them out? If so can you advise >>>>>>> on the commands? >>>>>> >>>>> >>>>> >>>>> >>>>> This email message may contain legally privileged and/or confidential >>>>> information. If you are not the intended recipient(s), or the employee >>>>> or agent responsible for the delivery of this message to the intended >>>>> recipient(s), you are hereby notified that any disclosure, copying, >>>>> distribution, or use of this email message is prohibited. If you have >>>>> received this message in error, please notify the sender immediately by >>>>> e-mail and delete this email message from your computer. Thank you. >>>>> _______________________________________________ >>>>> Bioc-devel@r-project.org mailing list >>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> >>> >>> >>> This email message may contain legally privileged and/or confidential >>> information. If you are not the intended recipient(s), or the employee or >>> agent responsible for the delivery of this message to the intended >>> recipient(s), you are hereby notified that any disclosure, copying, >>> distribution, or use of this email message is prohibited. If you have >>> received this message in error, please notify the sender immediately by >>> e-mail and delete this email message from your computer. Thank you. > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you.
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