Hello Maintainers,
The following packages have been identified for changing the functions
‘Matrix::cBind’ and ‘Matrix::rBind’ to the ‘base::cbind’ and ‘base::rbind’. The
functions ‘Matrix::cBind’ and ‘Matrix::rBind’ have been deprecated by the
author of the Matrix package.
(https://cran.r-project.org/web/packages/Matrix/news.html).
List of packages:
chromVAR, gCMAP, gespeR, HiTC, Mirsynergy, monocle, Ringo
I’ve issued a version bump along with the switch to the new functions. These
commits should be merged into your Github repos if you are maintaining your
packages on both Bioconductor and Github.
The commit should look like this:
------------------------------------------------------------------------------------------------
Commit message from Nitesh Turaga <nitesh.tur...@gmail.com>,
Change from cBind and rBind to 'cbind' and 'rbind'.
- version bump
- Reference to NEWS file from Matrix package indicating
deprecated 'cBind' and 'rBind'
https://cran.r-project.org/web/packages/Matrix/news.html
------------------------------------------------------------------------------------------------
Please reply to this thread if you have any further questions regarding this
change.
Best regards,
Nitesh Turaga
Bioconductor Core Team
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