Dear all,
I am a maintainer of package 'esATAC'
I find this error if calling library(rJava) before using BiocGenerics::unique
The code is pasted below.
Thanks,
Zheng
> library(rJava)
> library(GenomicRanges)
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ
clusterExport, clusterMap, parApply, parCapply, parLapp
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:rJava’:
anyDuplicated, duplicated, sort, unique
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind,
colnames, colSums, dirname, do.call, duplicated, eval,
Filter, Find, get, grep, grepl, intersect, is.unsorted,
lengths, Map, mapply, match, mget, order, paste, pmax,
pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans
rowSums, sapply, setdiff, sort, table, tapply, union, u
unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
> gr1 <- GRanges(seqnames=Rle(c("ch1", "chMT"), c(2, 4)),
+ ranges=IRanges(16:21, 20),
+ strand=rep(c("+", "-", "*"), 2))
> unique(gr1)
Error: node stack overflow
> BiocGenerics::unique(gr1)
Error: node stack overflow
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