Thank you Nitesh! Where should I use the private key? I only see the public key mentioned here: http://bioconductor.org/developers/how-to/git/maintain-github-bioc/ Sorry if I'm missing something very obvious!
Best, Simina On Fri, Jan 26, 2018 at 12:23 PM, Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > Hi > > You are using the wrong key. > > The key we have on file for you is > > ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAACAQDk1ywCtjVfC0wewYRCvzEiAac3so7n > nRISC6xj3RkEerAUaOHHSA2RjlrG60TYjnEZGPyeN79oKNDP0NhCelsNR2us > gviCVeS04Qs2RhyzQVf5iNP/pJIBt21pwIvsW3CBqB1bTECUG8E9pK > 3Gtm77uyRAwLImJtH1RioJ1JpGWKZ0r0ZU0O9c//zwr+Ae8OB94kSEuQ0yTXZj1nHfzL3vHsDt > I8SsF3UE22RhS/sClW7s3raAlGNbmVdURZ2726JW2jIm40jeLDScdfO8UGEr5bWgVo7bnl6bzY > UBsS2l8I2DZZHKIC+A1wBngNFpKNJ6dTpKzadkRudGbvU5q > cIoX2zQNGzs/IyTh3LnX1TbCR1TbG/zC1BwoLB64yyjYI0O2nb+ > ZhhRyXyoljX6AtoMgr16vwUfO+ts3HoD060WTFx29jucqV8rtYXNhDzZmqQs8Z5Ajk++ > 8A0x7fxtuAR1FTVNByaTmH3PAIW6WU9wXXpQEz72mSm7FpQgQDkOfjRBQKqR > nGbhaay8qltMYaqzjQLA8pBl7YIa5Km5UvyvV2DbAHS0B1R8w7c8L3kmPj5M > PJZdAcRc6Nc0ByE4pYVwv8mosMB4gt12Lzuj0hz5ID9SDUPq8QghGJiWhVyb > ZpKafu8VQ7E5QvqBC6DHhpKhdodt16BymxkEWk380yODUQ== > > > You should use a private key corresponding to that public key. > > Best, > > Nitesh > > > On Jan 26, 2018, at 12:05 PM, Simina Boca <smb...@georgetown.edu> wrote: > > > > Dear all, > > Thank you to Sean, Lori, and Nitesh for helping me out with a package > update last year. I'm now trying to update another package, MultiMed. I > have it set up on Github https://github.com/SiminaB/MultiMed - you can > see that the contributors are Marc, Herve, and Dan Tenenbaum. > > However, I get the same error as I got before when doing "git push > upstream master": > > Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) > to the list of known hosts. > > Enter passphrase for key '/c/Users/sboca/.ssh/id_rsa': > > FATAL: W any packages/swfdr SiminaB DENIED by fallthru > > (or you mis-spelled the reponame) > > fatal: Could not read from remote repository. > > > > Please make sure you have the correct access rights > > and the repository exists. > > > > Do I need to submit anything else or should BioC already know that I'm > the same person who is managing these packages? > > > > Thanks so much! > > > > Cheers, > > Simina > > > > > > On Tue, Sep 12, 2017 at 10:17 AM, Turaga, Nitesh < > nitesh.tur...@roswellpark.org> wrote: > > Hi Simina, > > > > Please try again now. > > > > The issue was you didn’t submit your SVN ID “s.boca”. This is needed for > people who have been maintainers before the Git transition, to associate > your key to the package. > > > > For new packages this issue doesn’t apply, because we just collect their > Github IDs. > > > > Hope this helps. > > > > Best, > > > > Nitesh > > > > > On Sep 11, 2017, at 2:50 PM, Simina Boca <smb...@georgetown.edu> > wrote: > > > > > > Thank you again Sean and Lori! I am now past that initial stage. I now > have > > > to resolve merge conflicts, primarily in the DESCRIPTION file. When > > > following the instructions here http://bioconductor.org/ > > > developers/how-to/git/resolve-conflicts/ however, I ended up getting > the > > > error below: > > > > > > ~\Documents\GitHub\swfdr [master ≡ +0 ~0 -1 !]> git push upstream > master > > > Warning: Permanently added 'git.bioconductor.org,34.192.48.227' > (ECDSA) to > > > the list of known hosts. > > > Enter passphrase for key '/c/Users/sboca/.ssh/id_rsa': > > > FATAL: W any packages/swfdr SiminaB DENIED by fallthru > > > (or you mis-spelled the reponame) > > > fatal: Could not read from remote repository. > > > > > > Please make sure you have the correct access rights > > > and the repository exists. > > > > > > Thank you so much! > > > > > > Best, > > > Simina > > > > > > > > > On Wed, Sep 6, 2017 at 10:56 AM, Simina Boca <smb...@georgetown.edu> > wrote: > > > > > >> Thank you so much Sean and Lori! For some reason I thought the ssh key > > >> part was only relevant if the package was submitted via svn, which is > why i > > >> had overlooked those instructions initially. > > >> > > >> Cheers, > > >> Simina > > >> > > >> On Wed, Sep 6, 2017 at 7:01 AM, Shepherd, Lori < > > >> lori.sheph...@roswellpark.org> wrote: > > >> > > >>> Have you submitted your ssh key > > >>> > > >>> > > >>> https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480v > > >>> o4tNufs0ziNyNmexegNZgNieIovbAA/viewform > > >>> > > >>> <https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tN > ufs0ziNyNmexegNZgNieIovbAA/viewform> > > >>> git / svn transition: ssh keys > > >>> <https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tN > ufs0ziNyNmexegNZgNieIovbAA/viewform> > > >>> docs.google.com > > >>> Use this form to link your existing svn credentials with access > > >>> permissions to the new Bioconductor git repository. To do this, we > need an > > >>> ssh public key. You might have added these to github, see > > >>> https://github.com/your-github-id.keys. Alternatively, you may > provide > > >>> the ssh public key directly, e.g., copy-pasting ~/.ssh/id_rsa.pub. To > > >>> generate ssh key pairs, see https://help.github.com/articl > > >>> es/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/ > > >>> > > >>> > > >>> > > >>> > > >>> Lori Shepherd > > >>> > > >>> Bioconductor Core Team > > >>> > > >>> Roswell Park Cancer Institute > > >>> > > >>> Department of Biostatistics & Bioinformatics > > >>> > > >>> Elm & Carlton Streets > > >>> > > >>> Buffalo, New York 14263 > > >>> ------------------------------ > > >>> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > > >>> Simina Boca <smb...@georgetown.edu> > > >>> *Sent:* Tuesday, September 5, 2017 11:40:37 PM > > >>> *To:* bioc-devel@r-project.org > > >>> *Subject:* [Bioc-devel] updating Bioconductor package that is > already on > > >>> Github > > >>> > > >>> Dear all, > > >>> > > >>> I hope this isn't a duplicate of another question. Here goes: > > >>> > > >>> - I would like to update my swfdr package, which is already on > > >>> Bioconductor. It is also on Github and my submission process was via > > >>> opening an issue at https://github.com/Bioconducto > > >>> r/Contributions/issues/213 > > >>> > > >>> - At this point there are some slight differences between the Github > and > > >>> Bioconductor versions, for example the Bioconductor version number > got > > >>> automatically bumped to 1.0.0 upon acceptance > > >>> > > >>> - I would like to first synchronize what is on Github to have the > current > > >>> version that is on Bioconductor before updating and also include any > > >>> updates in the next version of the package on Bioconductor > > >>> > > >>> - I did "git remote add upstream g...@git.bioconductor.org:packa > > >>> ges/swfdr.git" > > >>> as per some of the instructions for developers, so that now I have: > > >>> ~\Documents\GitHub\swfdr [master ≡ +0 ~0 -1 !]> git remote -v > > >>> origin https://github.com/leekgroup/swfdr.git (fetch) > > >>> origin https://github.com/leekgroup/swfdr.git (push) > > >>> upstream g...@git.bioconductor.org:packages/swfdr.git (fetch) > > >>> upstream g...@git.bioconductor.org:packages/swfdr.git (push) > > >>> > > >>> *but* when I try to fetch upstream content, via: > > >>> git fetch upstream > > >>> > > >>> I get an error: > > >>> ~\Documents\GitHub\swfdr [master ≡ +0 ~0 -1 !]> git fetch upstream > > >>> Warning: Permanently added 'git.bioconductor.org,34.192.48.227' > (ECDSA) > > >>> to > > >>> the list of known hosts. > > >>> Permission denied (publickey). > > >>> fatal: Could not read from remote repository. > > >>> > > >>> Please make sure you have the correct access rights > > >>> > > >>> Am I missing something here? Alternatively, I suppose I can just > make the > > >>> changes I want and simply open another issue, although it would be > nice to > > >>> have an easy to sync it with what is already on Bioconductor. > > >>> > > >>> Thank you in advance for your help and I apologize if I missed > anything > > >>> obvious! > > >>> > > >>> Cheers, > > >>> Simina > > >>> > > >>> -- > > >>> Simina M. Boca > > >>> Assistant Professor > > >>> Innovation Center for Biomedical Informatics (ICBI) > > >>> Department of Oncology | Georgetown University Medical Center > > >>> Department of Biostatistics, Bioinformatics and Biomathematics | > > >>> Georgetown > > >>> University Medical Center > > >>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer > > >>> Center > > >>> > > >>> 2115 Wisconsin Ave NW, Suite 110 > > >>> Washington, DC 20007 > > >>> Phone: (202) 687-1545 > > >>> Fax: (202) 687-5011 > > >>> http://icbi.georgetown.edu/boca > > >>> > > >>> [[alternative HTML version deleted]] > > >>> > > >>> _______________________________________________ > > >>> Bioc-devel@r-project.org mailing list > > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > >>> > > >>> This email message may contain legally privileged and/or confidential > > >>> information. If you are not the intended recipient(s), or the > employee or > > >>> agent responsible for the delivery of this message to the intended > > >>> recipient(s), you are hereby notified that any disclosure, copying, > > >>> distribution, or use of this email message is prohibited. If you have > > >>> received this message in error, please notify the sender immediately > by > > >>> e-mail and delete this email message from your computer. Thank you. > > >> > > >> > > >> > > >> > > >> -- > > >> Simina M. Boca > > >> Assistant Professor > > >> Innovation Center for Biomedical Informatics (ICBI) > > >> Department of Oncology | Georgetown University Medical Center > > >> Department of Biostatistics, Bioinformatics and Biomathematics | > > >> Georgetown University Medical Center > > >> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer > > >> Center > > >> > > >> 2115 Wisconsin Ave NW, Suite 110 > > >> Washington, DC 20007 > > >> Phone: (202) 687-1545 > > >> Fax: (202) 687-5011 > > >> http://icbi.georgetown.edu/boca > > >> > > >> > > > > > > > > > > > > -- > > > Simina M. Boca > > > Assistant Professor > > > Innovation Center for Biomedical Informatics (ICBI) > > > Department of Oncology | Georgetown University Medical Center > > > Department of Biostatistics, Bioinformatics and Biomathematics | > Georgetown > > > University Medical Center > > > Cancer Prevention and Control Program | Lombardi Comprehensive Cancer > Center > > > > > > 2115 Wisconsin Ave NW, Suite 110 > > > Washington, DC 20007 > > > Phone: (202) 687-1545 > > > Fax: (202) 687-5011 > > > http://icbi.georgetown.edu/boca > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > > > > > > > -- > > Simina M. Boca > > Assistant Professor > > Innovation Center for Biomedical Informatics (ICBI) > > Department of Oncology | Georgetown University Medical Center > > Department of Biostatistics, Bioinformatics and Biomathematics | > Georgetown University Medical Center > > Cancer Prevention and Control Program | Lombardi Comprehensive Cancer > Center > > > > 2115 Wisconsin Ave NW, Suite 110 > > Washington, DC 20007 > > Phone: (202) 687-1545 > > Fax: (202) 687-5011 > > http://icbi.georgetown.edu/boca > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Simina M. Boca Assistant Professor Innovation Center for Biomedical Informatics (ICBI) Department of Oncology | Georgetown University Medical Center Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown University Medical Center Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center 2115 Wisconsin Ave NW, Suite 110 Washington, DC 20007 Phone: (202) 687-1545 Fax: (202) 687-5011 http://icbi.georgetown.edu/boca [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
