Thank you so much Sean and Lori! For some reason I thought the ssh key part was only relevant if the package was submitted via svn, which is why i had overlooked those instructions initially.
Cheers, Simina On Wed, Sep 6, 2017 at 7:01 AM, Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Have you submitted your ssh key > > > https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tN > ufs0ziNyNmexegNZgNieIovbAA/viewform > > <https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform> > git / svn transition: ssh keys > <https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform> > docs.google.com > Use this form to link your existing svn credentials with access > permissions to the new Bioconductor git repository. To do this, we need an > ssh public key. You might have added these to github, see > https://github.com/your-github-id.keys. Alternatively, you may provide > the ssh public key directly, e.g., copy-pasting ~/.ssh/id_rsa.pub. To > generate ssh key pairs, see https://help.github.com/ > articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/ > > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Simina > Boca <smb...@georgetown.edu> > *Sent:* Tuesday, September 5, 2017 11:40:37 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] updating Bioconductor package that is already on > Github > > Dear all, > > I hope this isn't a duplicate of another question. Here goes: > > - I would like to update my swfdr package, which is already on > Bioconductor. It is also on Github and my submission process was via > opening an issue at https://github.com/Bioconductor/Contributions/ > issues/213 > > - At this point there are some slight differences between the Github and > Bioconductor versions, for example the Bioconductor version number got > automatically bumped to 1.0.0 upon acceptance > > - I would like to first synchronize what is on Github to have the current > version that is on Bioconductor before updating and also include any > updates in the next version of the package on Bioconductor > > - I did "git remote add upstream g...@git.bioconductor.org:packa > ges/swfdr.git" > as per some of the instructions for developers, so that now I have: > ~\Documents\GitHub\swfdr [master ≡ +0 ~0 -1 !]> git remote -v > origin https://github.com/leekgroup/swfdr.git (fetch) > origin https://github.com/leekgroup/swfdr.git (push) > upstream g...@git.bioconductor.org:packages/swfdr.git (fetch) > upstream g...@git.bioconductor.org:packages/swfdr.git (push) > > *but* when I try to fetch upstream content, via: > git fetch upstream > > I get an error: > ~\Documents\GitHub\swfdr [master ≡ +0 ~0 -1 !]> git fetch upstream > Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to > the list of known hosts. > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > > Am I missing something here? Alternatively, I suppose I can just make the > changes I want and simply open another issue, although it would be nice to > have an easy to sync it with what is already on Bioconductor. > > Thank you in advance for your help and I apologize if I missed anything > obvious! > > Cheers, > Simina > > -- > Simina M. Boca > Assistant Professor > Innovation Center for Biomedical Informatics (ICBI) > Department of Oncology | Georgetown University Medical Center > Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown > University Medical Center > Cancer Prevention and Control Program | Lombardi Comprehensive Cancer > Center > > 2115 Wisconsin Ave NW, Suite 110 > Washington, DC 20007 > Phone: (202) 687-1545 > Fax: (202) 687-5011 > http://icbi.georgetown.edu/boca > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Simina M. Boca Assistant Professor Innovation Center for Biomedical Informatics (ICBI) Department of Oncology | Georgetown University Medical Center Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown University Medical Center Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center 2115 Wisconsin Ave NW, Suite 110 Washington, DC 20007 Phone: (202) 687-1545 Fax: (202) 687-5011 http://icbi.georgetown.edu/boca [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
