Hi Hervé --- Thanks for pointing out all of the information available on the builds to me. Based on the information you point out, I think I've been able to add the required data set to the biotmleData package by bumping the versions on the RELEASE_3_5 and master branches appropriately (and made sure the version numbers differ this time). Thanks much for your help.
Warm Regards, — Nima Hejazi -- Nima Hejazi Doctoral Student Division of Biostatistics University of California, Berkeley van der Laan Group <https://www.stat.berkeley.edu/~laan/> | Hubbard Group <http://hubbard.berkeley.edu/> http://www.stat.berkeley.edu/~nhejazi http://nimahejazi.org | Nima's blog <http://nimahejazi.org/blog/> On Mon, Sep 11, 2017 at 10:49 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Nima, > > The build machines are NOT trying to use version 1.0.0 of the > biotmleData package. They are using the version that is currently > publicly available here: > > > https://bioconductor.org/packages/3.6/data/experiment/html/ > biotmleData.html > > It's version 1.1.0. The build machines installed it with just > biocLite("biotmleData"), like any user would. FWIW you can see all > the packages that are installed on the build machines by clicking > on the numbers in the "Installed pkgs" columns in the little table > at the top of the build report: > > https://bioconductor.org/checkResults/3.6/bioc-LATEST/ > > The problem is that this version of biotmleData does not have the > rnaseqtmleOut dataset. This is easy to verify: > > > library(BiocInstaller) > Bioconductor version 3.6 (BiocInstaller 1.27.4), ?biocLite for help > > > biocLite("biotmleData") > BioC_mirror: https://bioconductor.org > Using Bioconductor 3.6 (BiocInstaller 1.27.4), R 3.4.0 Patched (2017-04-26 > r72630). > Installing package(s) 'biotmleData' > trying URL 'https://bioconductor.org/packages/3.6/data/experiment/src/ > contrib/biotmleData_1.1.0.tar.gz' > Content type 'application/x-gzip' length 30240432 bytes (28.8 MB) > ================================================== > downloaded 28.8 MB > > * installing *source* package 'biotmleData' ... > ** R > ** data > *** moving datasets to lazyload DB > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices > ** testing if installed package can be loaded > * DONE (biotmleData) > > The downloaded source packages are in > '/tmp/Rtmp6y3T4h/downloaded_packages' > Updating HTML index of packages in '.Library' > Making 'packages.html' ... done > > > library(biotmleData) > > > data(rnaseqtmleOut) > Warning message: > In data(rnaseqtmleOut) : data set 'rnaseqtmleOut' not found > > Even though the dataset is now included in the *git source* of the > package, which is also at version 1.1.0, it seems that at the > time biotmleData 1.1.0 propagated to our public repo, it didn't > have it. > > So all you need to do is bump biotmleData's version to 1.1.1. > > Travis's Ubuntu, Appveyor, and your local machine (macOS) probably > use the git version of biotmleData so that's why biotmle builds there. > > Having different versions of a package around that have the same version > number is always a source of *a lot* of confusion! > > Hope this helps, > H. > > > > On 09/10/2017 08:30 PM, Nima Hejazi wrote: > >> Hi Hervé, >> >> Thanks for your note. I do indeed believe that the error was initially >> due to the build trying to use an older version of the data package >> biotmleData (1.0.0, as you stated). After the update of biotmleData (to >> 1.1.0; aside: I realize this is rather bad practice, but I don't intend >> to update the data package frequently at all -- hopefully never after >> the next release), the package biotmle ought to be building properly. In >> fact, as far as I can tell there might some kind of issue related to >> caching in the Bioconductor build because >> >> 1) biocLite is installing v.1.1.0 of biotmleData, which is the version >> required to properly build biotmle >> 2) independent builds are passing on all systems: Travis's Ubuntu, >> Appveyor, and my local machine (macOS) >> 3) I bumped the version of biotmle last week but even the most recent >> build (as of 09 September) is still failing, due to trying to use >> v.1.0.0 of biotmleData >> >> Is there something more I should be doing to fix the build? Thanks in >> advance for your help. >> >> Warm Regards, >> — Nima Hejazi >> >> -- >> Nima Hejazi >> Doctoral Student >> Division of Biostatistics >> University of California, Berkeley >> van der Laan Group >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www. >> stat.berkeley.edu_-7Elaan_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y >> _UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=MTTWsO0CHDXNi2QEGOXXy6W3 >> JoXnR8jmARpH95embb4&e=> >> | Hubbard Group >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> hubbard.berkeley.edu_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK >> 7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111 >> jV40ovpjdh4LfgSjLQBcpgsP_wc&s=1wPcpJEnKkTlWVvwSo3snmkolzodlq >> _4HV8thMQyQeo&e=> >> http://www.stat.berkeley.edu/~nhejazi >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www. >> stat.berkeley.edu_-7Enhejazi&d=DwMFaQ&c=eRAMFD45gAfqt84VtBc >> fhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa3 >> 7y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=JjREjYmeoh3-mFCS4jDgd5 >> TcPfqhYsfZX71QD6BXKWc&e=> >> http://nimahejazi.org >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3 >> XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV4 >> 0ovpjdh4LfgSjLQBcpgsP_wc&s=0Ib9ncWCyvezv9EwAgxToXhyNwIXePUe9a-Lw8BYodg&e=> >> | >> Nima's blog >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_blog_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7 >> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111j >> V40ovpjdh4LfgSjLQBcpgsP_wc&s=LgpvMqHhFGGQuu5ONvmoSNUFvHJ_EMh >> t0ksaQFECWN0&e=> >> >> On Wed, Sep 6, 2017 at 9:15 AM, Hervé Pagès <hpa...@fredhutch.org >> <mailto:hpa...@fredhutch.org>> wrote: >> >> Hi Nima, >> >> Normally you have to allow 24 hours or so to see your changes show up >> on the build report: >> >> https://bioconductor.org/checkResults/3.5/data-experiment-LATEST/ >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> bioconductor.org_checkResults_3.5_data-2Dexperiment- >> 2DLATEST_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWd >> GbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4L >> fgSjLQBcpgsP_wc&s=mDW2T8DX9a7ih1OpihXfq0QpFhLig0EVcrr5Z-T1MGc&e=> >> >> and on the package landing page: >> >> >> https://bioconductor.org/packages/3.5/data/experiment/html/ >> biotmleData.html >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> bioconductor.org_packages_3.5_data_experiment_html_biotmleDa >> ta.html&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGb >> WY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4Lfg >> SjLQBcpgsP_wc&s=m5bkMpeBC8OWwE_Jo_duoxydLEvZ4mwVwxI0MmhYcew&e=> >> >> But sometimes more if our build system was not able to complete the >> builds. >> >> The package version you see on the package landing page is the one >> you'll get via biocLite(). Right now, when I do >> biocLite("biotmleData") >> in BioC release, I get biotmleData 1.1.0. When you tried this >> yesterday >> maybe you got version version 1.0.0 because version 1.1.0 hadn't >> propagated yet. >> >> BTW bumping the version from 1.0.0 to 1.1.0 in release is not a good >> idea. You should only bump the z part of the x.y.z version when you >> make >> changes in release. See >> >> https://bioconductor.org/developers/how-to/version-numbering/ >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> bioconductor.org_developers_how-2Dto_version-2Dnumbering_& >> d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW >> 0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpg >> sP_wc&s=w18Nz5ArlNGaTj9_sl0r2RDxazO6xYLMD9ej8ViRL3s&e=> >> >> >> for more information on this. >> >> Cheers, >> H. >> >> On 09/05/2017 11:56 AM, Nima Hejazi wrote: >> >> Hi Nitesh -- >> >> Thanks very much for the help on this last week. I've been >> investigating >> the build problem displayed on the page you linked rather slowly >> but have >> reached a point where I now have a question: >> >> - The error appears to be due to an example data set not >> being found. >> This data set appears in the biotmleData package on Bioc. >> I've updated >> biotmleData on both the master and RELEASE_3_5 branches to >> now contain that >> data set, but when I install biotmleData via biocLite, I >> still get version >> 1.0.0 -- even though RELEASE_3_5 now contains 1.1.0 -- is >> there something >> that I am missing here? >> - The GitHub repos for biotmle >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909X >> LsL3YZwDSueYxrTqNA028&e= >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909X >> LsL3YZwDSueYxrTqNA028&e=> >> > and >> biotmleData >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmleData&d=DwIGaQ&c=eRAMFD45gAfqt84VtB >> cfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66f >> Z2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=u3lrjrrPopzPue9JmH71D >> SbjPoq1VnAuMUeoe1F_WaE&e= >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmleData&d=DwIGaQ&c=eRAMFD45gAfqt84VtB >> cfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66f >> Z2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=u3lrjrrPopzPue9JmH71D >> SbjPoq1VnAuMUeoe1F_WaE&e=> >> > contain both the >> master and RELEASE_3_5 branch, both of which appear to be >> fully >> synced/updated wrt to Bioconductor (i.e., "git pull bioc >> RELEASE_3_5" >> returns "Everything up-to-date"), so I don't believe this >> to be a sync >> issue. >> >> >> Any help in resolving this issue would be much appreciated. >> >> Warm Regards, >> — Nima Hejazi >> >> -- >> Nima Hejazi >> Doctoral Student >> Division of Biostatistics >> University of California, Berkeley >> van der Laan Group >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www. >> stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ >> ja-UIQqMdTomPAmUEBmNk&e= >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www. >> stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ >> ja-UIQqMdTomPAmUEBmNk&e=> >> > | Hubbard Group >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK >> 7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpT >> cbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8 >> kQydG3IlkV1Og&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK >> 7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpT >> cbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8 >> kQydG3IlkV1Og&e=> >> > >> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat >> .berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843 >> o83lkNN0Z1Ow9YF01YnkQ&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www. >> stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBc >> fhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ >> 2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843 >> o83lkNN0Z1Ow9YF01YnkQ&e=> >> https://urldefense.proofpoint.com/v2/url?u=http-3A__nimaheja >> zi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbW >> Y_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24ev >> QfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAv >> imeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_ >> QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=> >> | Nima's blog >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7 >> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTc >> bLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrO >> njvXgXvYC_40&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7 >> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTc >> bLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrO >> njvXgXvYC_40&e=> >> > >> >> On Mon, Aug 28, 2017 at 11:58 AM, Turaga, Nitesh < >> nitesh.tur...@roswellpark.org >> <mailto:nitesh.tur...@roswellpark.org>> wrote: >> >> Hi Nima, >> >> Please check >> https://urldefense.proofpoint.com/v2/url?u=http-3A__biocondu >> ctor.org_checkResults_3.6_bioc-2DLATEST_&d=DwIGaQ&c=eRAM >> FD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaP >> hzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=Utq-cY0 >> IaWdeVTBbsfkOjDpn84D1xDqKaheeHXmgbNc&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> bioconductor.org_checkResults_3.6_bioc-2DLATEST_&d=DwIGaQ&c= >> eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJ >> KaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s= >> Utq-cY0IaWdeVTBbsfkOjDpn84D1xDqKaheeHXmgbNc&e=> >> biotmle/malbec1-buildsrc.html, it shows that the page was >> generated on >> Sunday. There is also a snapshot date when your repo was >> captured by the >> nightly build, and even the last commit. >> >> But this issue, is because your package has an ERROR, and >> there hasn’t >> been a version bump. >> >> Best, >> >> Nitesh >> >> >> >> On Aug 28, 2017, at 2:48 PM, Nima Hejazi >> <nhej...@berkeley.edu <mailto:nhej...@berkeley.edu>> >> wrote: >> >> Hello All --- >> >> After the relatively recent migration from SVN to git, >> I've followed the >> various guidelines for linking the GitHub repo >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909X >> LsL3YZwDSueYxrTqNA028&e= >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__ >> github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfh >> Q&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2E >> wKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909X >> LsL3YZwDSueYxrTqNA028&e=> >> > of my package biotmle to the >> Bioconductor git server, I've pushed several important >> updates to the >> >> Bioc >> >> master branch. >> >> My understanding is that the master branch represents >> the development >> version (in contrast to RELEASE_3_5). That said, it >> appears that the >> >> package >> >> landing page for the Bioc development version >> <https://urldefense.proofpoint >> .com/v2/url?u=https-3A__www.bioconductor.org_packages_ >> devel_bioc_html_biotmle.html&d=DwIGaQ&c=eRAMFD45gAfqt84VtBc >> fhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ >> 2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=GbClVUyh6jrp_sWbrGF_QR >> viL57GEEPl2z2E5LpN4e0&e= >> <https://urldefense.proofpoint >> .com/v2/url?u=https-3A__www.bioconductor.org_packages_ >> devel_bioc_html_biotmle.html&d=DwIGaQ&c=eRAMFD45gAfqt84VtBc >> fhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ >> 2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=GbClVUyh6jrp_sWbrGF_QR >> viL57GEEPl2z2E5LpN4e0&e=> >> > >> >> does >> >> not reflect the current status of the master branch of >> the Bioc git >> >> history. >> >> >> Perhaps I am missing something simple? Any help would be >> much >> >> appreciated. >> >> >> Warm Regards, >> — Nima Hejazi >> >> -- >> Nima Hejazi >> Doctoral Student >> Division of Biostatistics >> University of California, Berkeley >> van der Laan Group >> <https://urldefense.proofpoint >> .com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d= >> DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0W >> YiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU- >> mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e= >> <https://urldefense.proofpoint >> .com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d= >> DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0W >> YiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU- >> mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e=> >> > | Hubbard >> >> Group >> >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK >> 7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpT >> cbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8 >> kQydG3IlkV1Og&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK >> 7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpT >> cbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8 >> kQydG3IlkV1Og&e=> >> > >> https://urldefense.proofpoint. >> com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d= >> DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0W >> YiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU- >> mtdaA&s=BTn2lu5Zk5mBtu6-5sC843o83lkNN0Z1Ow9YF01YnkQ&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www. >> stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBc >> fhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ >> 2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843 >> o83lkNN0Z1Ow9YF01YnkQ&e=> >> https://urldefense.proofpoint. >> com/v2/url?u=http-3A__nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfq >> t84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8 >> mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO >> 7ApRH-bDkc6CwLS8QSTp-diDl5yA&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAv >> imeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_ >> QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=> >> | Nima's blog >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7 >> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTc >> bLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrO >> njvXgXvYC_40&e= >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ >> nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7 >> q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTc >> bLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrO >> njvXgXvYC_40&e=> >> > >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org >> <mailto:Bioc-devel@r-project.org> mailing list >> https://urldefense.proofpoint. >> com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2D >> devel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY >> _wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQ >> fZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e= >> <https://urldefense.proofpoint >> .com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc- >> 2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGb >> WY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24e >> vQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=> >> >> >> >> >> This email message may contain legally privileged and/or >> confidential >> information. If you are not the intended recipient(s), or >> the employee or >> agent responsible for the delivery of this message to the >> intended >> recipient(s), you are hereby notified that any disclosure, >> copying, >> distribution, or use of this email message is prohibited. >> If you have >> received this message in error, please notify the sender >> immediately by >> e-mail and delete this email message from your computer. >> Thank you. >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> >> mailing list >> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.et >> hz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt >> 84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8m >> mx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n >> 5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e= >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat. >> ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAf >> qt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m= >> 8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs >> 3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=> >> >> >> -- >> Hervé Pagès >> >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N, M1-B514 >> P.O. Box 19024 >> Seattle, WA 98109-1024 >> >> E-mail: hpa...@fredhutch.org <mailto:hpa...@fredhutch.org> >> Phone: (206) 667-5791 <tel:%28206%29%20667-5791> >> Fax: (206) 667-1319 <tel:%28206%29%20667-1319> >> >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
