Hi Nima,
The build machines are NOT trying to use version 1.0.0 of the
biotmleData package. They are using the version that is currently
publicly available here:
https://bioconductor.org/packages/3.6/data/experiment/html/biotmleData.html
It's version 1.1.0. The build machines installed it with just
biocLite("biotmleData"), like any user would. FWIW you can see all
the packages that are installed on the build machines by clicking
on the numbers in the "Installed pkgs" columns in the little table
at the top of the build report:
https://bioconductor.org/checkResults/3.6/bioc-LATEST/
The problem is that this version of biotmleData does not have the
rnaseqtmleOut dataset. This is easy to verify:
> library(BiocInstaller)
Bioconductor version 3.6 (BiocInstaller 1.27.4), ?biocLite for help
> biocLite("biotmleData")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.27.4), R 3.4.0 Patched (2017-04-26
r72630).
Installing package(s) 'biotmleData'
trying URL
'https://bioconductor.org/packages/3.6/data/experiment/src/contrib/biotmleData_1.1.0.tar.gz'
Content type 'application/x-gzip' length 30240432 bytes (28.8 MB)
==================================================
downloaded 28.8 MB
* installing *source* package 'biotmleData' ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (biotmleData)
The downloaded source packages are in
'/tmp/Rtmp6y3T4h/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
> library(biotmleData)
> data(rnaseqtmleOut)
Warning message:
In data(rnaseqtmleOut) : data set 'rnaseqtmleOut' not found
Even though the dataset is now included in the *git source* of the
package, which is also at version 1.1.0, it seems that at the
time biotmleData 1.1.0 propagated to our public repo, it didn't
have it.
So all you need to do is bump biotmleData's version to 1.1.1.
Travis's Ubuntu, Appveyor, and your local machine (macOS) probably
use the git version of biotmleData so that's why biotmle builds there.
Having different versions of a package around that have the same version
number is always a source of *a lot* of confusion!
Hope this helps,
H.
On 09/10/2017 08:30 PM, Nima Hejazi wrote:
Hi Hervé,
Thanks for your note. I do indeed believe that the error was initially
due to the build trying to use an older version of the data package
biotmleData (1.0.0, as you stated). After the update of biotmleData (to
1.1.0; aside: I realize this is rather bad practice, but I don't intend
to update the data package frequently at all -- hopefully never after
the next release), the package biotmle ought to be building properly. In
fact, as far as I can tell there might some kind of issue related to
caching in the Bioconductor build because
1) biocLite is installing v.1.1.0 of biotmleData, which is the version
required to properly build biotmle
2) independent builds are passing on all systems: Travis's Ubuntu,
Appveyor, and my local machine (macOS)
3) I bumped the version of biotmle last week but even the most recent
build (as of 09 September) is still failing, due to trying to use
v.1.0.0 of biotmleData
Is there something more I should be doing to fix the build? Thanks in
advance for your help.
Warm Regards,
— Nima Hejazi
--
Nima Hejazi
Doctoral Student
Division of Biostatistics
University of California, Berkeley
van der Laan Group
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=MTTWsO0CHDXNi2QEGOXXy6W3JoXnR8jmARpH95embb4&e=>
| Hubbard Group
<https://urldefense.proofpoint.com/v2/url?u=http-3A__hubbard.berkeley.edu_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=1wPcpJEnKkTlWVvwSo3snmkolzodlq_4HV8thMQyQeo&e=>
http://www.stat.berkeley.edu/~nhejazi
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=JjREjYmeoh3-mFCS4jDgd5TcPfqhYsfZX71QD6BXKWc&e=>
http://nimahejazi.org
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=0Ib9ncWCyvezv9EwAgxToXhyNwIXePUe9a-Lw8BYodg&e=>
|
Nima's blog
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_blog_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=LgpvMqHhFGGQuu5ONvmoSNUFvHJ_EMht0ksaQFECWN0&e=>
On Wed, Sep 6, 2017 at 9:15 AM, Hervé Pagès <hpa...@fredhutch.org
<mailto:hpa...@fredhutch.org>> wrote:
Hi Nima,
Normally you have to allow 24 hours or so to see your changes show up
on the build report:
https://bioconductor.org/checkResults/3.5/data-experiment-LATEST/
<https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.5_data-2Dexperiment-2DLATEST_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=mDW2T8DX9a7ih1OpihXfq0QpFhLig0EVcrr5Z-T1MGc&e=>
and on the package landing page:
https://bioconductor.org/packages/3.5/data/experiment/html/biotmleData.html
<https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.5_data_experiment_html_biotmleData.html&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=m5bkMpeBC8OWwE_Jo_duoxydLEvZ4mwVwxI0MmhYcew&e=>
But sometimes more if our build system was not able to complete the
builds.
The package version you see on the package landing page is the one
you'll get via biocLite(). Right now, when I do biocLite("biotmleData")
in BioC release, I get biotmleData 1.1.0. When you tried this yesterday
maybe you got version version 1.0.0 because version 1.1.0 hadn't
propagated yet.
BTW bumping the version from 1.0.0 to 1.1.0 in release is not a good
idea. You should only bump the z part of the x.y.z version when you make
changes in release. See
https://bioconductor.org/developers/how-to/version-numbering/
<https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_developers_how-2Dto_version-2Dnumbering_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=2wRqRZa37y_UI111jV40ovpjdh4LfgSjLQBcpgsP_wc&s=w18Nz5ArlNGaTj9_sl0r2RDxazO6xYLMD9ej8ViRL3s&e=>
for more information on this.
Cheers,
H.
On 09/05/2017 11:56 AM, Nima Hejazi wrote:
Hi Nitesh --
Thanks very much for the help on this last week. I've been
investigating
the build problem displayed on the page you linked rather slowly
but have
reached a point where I now have a question:
- The error appears to be due to an example data set not
being found.
This data set appears in the biotmleData package on Bioc.
I've updated
biotmleData on both the master and RELEASE_3_5 branches to
now contain that
data set, but when I install biotmleData via biocLite, I
still get version
1.0.0 -- even though RELEASE_3_5 now contains 1.1.0 -- is
there something
that I am missing here?
- The GitHub repos for biotmle
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909XLsL3YZwDSueYxrTqNA028&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909XLsL3YZwDSueYxrTqNA028&e=>
> and
biotmleData
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmleData&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=u3lrjrrPopzPue9JmH71DSbjPoq1VnAuMUeoe1F_WaE&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmleData&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=u3lrjrrPopzPue9JmH71DSbjPoq1VnAuMUeoe1F_WaE&e=>
> contain both the
master and RELEASE_3_5 branch, both of which appear to be fully
synced/updated wrt to Bioconductor (i.e., "git pull bioc
RELEASE_3_5"
returns "Everything up-to-date"), so I don't believe this
to be a sync
issue.
Any help in resolving this issue would be much appreciated.
Warm Regards,
— Nima Hejazi
--
Nima Hejazi
Doctoral Student
Division of Biostatistics
University of California, Berkeley
van der Laan Group
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e=>
> | Hubbard Group
<https://urldefense.proofpoint.com/v2/url?u=http-3A__hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8kQydG3IlkV1Og&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8kQydG3IlkV1Og&e=>
>
https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843o83lkNN0Z1Ow9YF01YnkQ&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843o83lkNN0Z1Ow9YF01YnkQ&e=>
https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=>
| Nima's blog
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrOnjvXgXvYC_40&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrOnjvXgXvYC_40&e=>
>
On Mon, Aug 28, 2017 at 11:58 AM, Turaga, Nitesh <
nitesh.tur...@roswellpark.org
<mailto:nitesh.tur...@roswellpark.org>> wrote:
Hi Nima,
Please check
https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_3.6_bioc-2DLATEST_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=Utq-cY0IaWdeVTBbsfkOjDpn84D1xDqKaheeHXmgbNc&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_3.6_bioc-2DLATEST_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=Utq-cY0IaWdeVTBbsfkOjDpn84D1xDqKaheeHXmgbNc&e=>
biotmle/malbec1-buildsrc.html, it shows that the page was
generated on
Sunday. There is also a snapshot date when your repo was
captured by the
nightly build, and even the last commit.
But this issue, is because your package has an ERROR, and
there hasn’t
been a version bump.
Best,
Nitesh
On Aug 28, 2017, at 2:48 PM, Nima Hejazi
<nhej...@berkeley.edu <mailto:nhej...@berkeley.edu>> wrote:
Hello All ---
After the relatively recent migration from SVN to git,
I've followed the
various guidelines for linking the GitHub repo
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909XLsL3YZwDSueYxrTqNA028&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nhejazi_biotmle&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9YlcDD3Gj1idpcDfRv909XLsL3YZwDSueYxrTqNA028&e=>
> of my package biotmle to the
Bioconductor git server, I've pushed several important
updates to the
Bioc
master branch.
My understanding is that the master branch represents
the development
version (in contrast to RELEASE_3_5). That said, it
appears that the
package
landing page for the Bioc development version
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_packages_devel_bioc_html_biotmle.html&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=GbClVUyh6jrp_sWbrGF_QRviL57GEEPl2z2E5LpN4e0&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_packages_devel_bioc_html_biotmle.html&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=GbClVUyh6jrp_sWbrGF_QRviL57GEEPl2z2E5LpN4e0&e=>
>
does
not reflect the current status of the master branch of
the Bioc git
history.
Perhaps I am missing something simple? Any help would be
much
appreciated.
Warm Regards,
— Nima Hejazi
--
Nima Hejazi
Doctoral Student
Division of Biostatistics
University of California, Berkeley
van der Laan Group
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.stat.berkeley.edu_-7Elaan_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=x8GhbJbVSpx7qQOlLfUK4_ja-UIQqMdTomPAmUEBmNk&e=>
> | Hubbard
Group
<https://urldefense.proofpoint.com/v2/url?u=http-3A__hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8kQydG3IlkV1Og&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__hubbard.berkeley.edu_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=t-f3XRwcu1B2X5ECo1iYUwZwjyNuP8kQydG3IlkV1Og&e=>
>
https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843o83lkNN0Z1Ow9YF01YnkQ&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.stat.berkeley.edu_-7Enhejazi&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=BTn2lu5Zk5mBtu6-5sC843o83lkNN0Z1Ow9YF01YnkQ&e=>
https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=9SgIZVMQy8w6hOO7ApRH-bDkc6CwLS8QSTp-diDl5yA&e=>
| Nima's blog
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrOnjvXgXvYC_40&e=
<https://urldefense.proofpoint.com/v2/url?u=http-3A__nimahejazi.org_blog_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=IEHeHRRW-yikdVb8REoffz9x1ca4MrOnjvXgXvYC_40&e=>
>
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org> mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=>
This email message may contain legally privileged and/or
confidential
information. If you are not the intended recipient(s), or
the employee or
agent responsible for the delivery of this message to the
intended
recipient(s), you are hereby notified that any disclosure,
copying,
distribution, or use of this email message is prohibited.
If you have
received this message in error, please notify the sender
immediately by
e-mail and delete this email message from your computer.
Thank you.
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org>
mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=
<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8mmx66fZ2EwKOSpTcbLrkO_QfbE24evQfZMzU-mtdaA&s=U0_dzOn2mTogJs3n5GXGqOeiiF1Wn_iOTUYQ4elmdeg&e=>
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fredhutch.org <mailto:hpa...@fredhutch.org>
Phone: (206) 667-5791 <tel:%28206%29%20667-5791>
Fax: (206) 667-1319 <tel:%28206%29%20667-1319>
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
