This helps, Thank you so much! ________________________________ From: Herv� Pag�s <hpa...@fredhutch.org> Sent: Monday, December 5, 2016 9:16:15 PM To: Dwivedi, Bhakti Cc: bioc-devel Subject: Re: [Bioc-devel] biconductor build error and warning
Hi Bhakti, Please see my post from October here https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009997.html for why Rmpfr (and thus HH) fails to install on oaxaca. We're still hoping that the CRAN folks will start providing Mac binary packages for r-devel soon. In the meantime please ignore that error on oaxaca. Cheers, H. On 12/04/2016 04:37 PM, Dwivedi, Bhakti wrote: > Thank you so much Dan!! > > ________________________________ > From: Dan Tenenbaum <dtene...@fredhutch.org> > Sent: Sunday, December 4, 2016 1:41:59 PM > To: Dwivedi, Bhakti > Cc: bioc-devel > Subject: Re: [Bioc-devel] biconductor build error and warning > > > > ----- Original Message ----- >> From: "Bhakti Dwivedi" <bhakti.dwiv...@emory.edu> >> To: "bioc-devel" <bioc-devel@r-project.org> >> Sent: Sunday, December 4, 2016 6:29:22 AM >> Subject: [Bioc-devel] biconductor build error and warning > >> Could anyone please help me with the below two bioconductor build error and >> warnings? >> >> >> I am getting the below ERROR Bioconductor build msg on Mac OS X >> (https://github.com/Bioconductor/Contributions/issues/202) >> >> >> installing the package to build vignettes >> ERROR: dependency HH is not available for package GISPA >> >> > > This is because HH depends on Rmpfr which has some system dependencies that > are not yet installed on that machine; I'm sure a member of the Bioconductor > team will get to this soon. > > >> removing >> /private/var/folders/_l/1jpyvgt17qzgj1yz7f0z4np80000gr/T/Rtmp939MXS/Rinst16ad7608b810a/GISPA >> ERROR: package installation failed >> >> >> I do not get this ERROR messages when I build, check or install on my Mac OS >> X. >> >> >> Additionally, I am getting the below warning message: >> >> >> WARNING: Update R version dependency from 3.3.2 to 3.4. >> > > > This is because your DESCRIPTION file says > > Depends: R (>= 3.3.2) > > But since you are submitting to the devel branch of Bioconductor, which will > only work with R-3.4, you should update this to > > Depends: R (>= 3.4) > > Dan > > >> >> Appreciate your help and any suggestions to fix them. >> >> >> Thank you. >> >> >> ________________________________ >> >> This e-mail message (including any attachments) is for...{{dropped:22}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Herv� Pag�s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 ________________________________ This e-mail message (including any attachments) is for t...{{dropped:14}}
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