Hi Bhakti,
Please see my post from October here
https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009997.html
for why Rmpfr (and thus HH) fails to install on oaxaca.
We're still hoping that the CRAN folks will start providing Mac
binary packages for r-devel soon.
In the meantime please ignore that error on oaxaca.
Cheers,
H.
On 12/04/2016 04:37 PM, Dwivedi, Bhakti wrote:
Thank you so much Dan!!
________________________________
From: Dan Tenenbaum <dtene...@fredhutch.org>
Sent: Sunday, December 4, 2016 1:41:59 PM
To: Dwivedi, Bhakti
Cc: bioc-devel
Subject: Re: [Bioc-devel] biconductor build error and warning
----- Original Message -----
From: "Bhakti Dwivedi" <bhakti.dwiv...@emory.edu>
To: "bioc-devel" <bioc-devel@r-project.org>
Sent: Sunday, December 4, 2016 6:29:22 AM
Subject: [Bioc-devel] biconductor build error and warning
Could anyone please help me with the below two bioconductor build error and
warnings?
I am getting the below ERROR Bioconductor build msg on Mac OS X
(https://github.com/Bioconductor/Contributions/issues/202)
installing the package to build vignettes
ERROR: dependency HH is not available for package GISPA
This is because HH depends on Rmpfr which has some system dependencies that are
not yet installed on that machine; I'm sure a member of the Bioconductor team
will get to this soon.
removing
/private/var/folders/_l/1jpyvgt17qzgj1yz7f0z4np80000gr/T/Rtmp939MXS/Rinst16ad7608b810a/GISPA
ERROR: package installation failed
I do not get this ERROR messages when I build, check or install on my Mac OS X.
Additionally, I am getting the below warning message:
WARNING: Update R version dependency from 3.3.2 to 3.4.
This is because your DESCRIPTION file says
Depends: R (>= 3.3.2)
But since you are submitting to the devel branch of Bioconductor, which will
only work with R-3.4, you should update this to
Depends: R (>= 3.4)
Dan
Appreciate your help and any suggestions to fix them.
Thank you.
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Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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