Hi Hervé, Thank you for the feedback, that makes sense. Thanks also to all the BioC system admins for maintaining such a large system of interdependent packages. BioC makes complex genomics data analysis so easily accessible to community researchers.
Regards, Shraddha On Wed, Oct 26, 2016 at 3:32 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Shraddha, > > On 10/26/2016 11:12 AM, Shraddha Pai wrote: > >> Hello BioC developers, >> >> I'm not sure why the nightly build of my package IdeoViz is reporting this >> error on tokay (see message below). It seems to me that not having Biobase >> installed is such a fundamental problem that the package should have been >> flagged when it first got submitted (sometime in 2014). What am I missing? >> > > If you look at the full report > > https://bioconductor.org/checkResults/3.5/bioc-LATEST/ > > you'll see that hundreds of packages were victims of that problems > during yesterday builds. This is a problem we see sometimes on the > Windows builders. We're working on it. > > The problem should clear out in a couple of hours when the report > gets updated with the results of today's builds. > > Sorry for the inconvenience. > > >> Separately, I got a message about 10 days back reporting a build error on >> malbec1, but that seems to have resolved without my intervention. Does >> anyone know what the case could have been there? >> > > Hard to know for sure without knowing the details of the build error but > if your package is trying to access some remote resource then it could > be that it failed 10 days ago because that resource was momentarily > unavailable. > > Cheers, > H. > > >> ---- >> >> * checking for file 'IdeoViz/DESCRIPTION' ... OK >> * preparing 'IdeoViz': >> * checking DESCRIPTION meta-information ... OK >> * installing the package to build vignettes >> Warning: running command >> '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rcmd.exe" INSTALL -l >> "C:\Users\biocbuild\bbs-3.5-bioc\tmpdir\Rtmpu0feNb\Rinst1230396730de" >> --no-multiarch "C:/Users/biocbuild/bbs-3.5-bi >> oc/tmpdir/Rtmpu0feNb/Rbuild123010852598/IdeoViz"' >> had status 1 >> ----------------------------------- >> ERROR: dependency 'Biobase' is not available for package 'IdeoViz' >> * removing 'C:/Users/biocbuild/bbs-3.5-bioc/tmpdir/Rtmpu0feNb/Rinst1230 >> 396730de/IdeoViz' >> ----------------------------------- >> ERROR: package installation failed >> >> --- >> >> Thanks for your time, >> Shraddha >> ---- >> Shraddha Pai >> Post-doctoral Fellow, http://baderlab.org >> The Donnelly Center, University of Toronto >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
