Hi Francesco, gmp is installed on oaxaca, but not Rmpfr. Both are CRAN packages. As you can see by visiting several CRAN package landing pages, CRAN doesn't provide Mac binaries for r-devel yet:
http://cran.fhcrc.org/web/packages/Rmpfr/index.html Our Mac and Windows builders always try to install the binary first, and then, in case this fails, they try the source package. On oaxaca both attempts failed. The 2nd attempt failed because it requires compilation and linking against the MPFR library which is not on the machine. It's unfortunate that CRAN doesn't provide the Mac binary packages for r-devel yet. I hope they will soon. None of our Mac or Windows builders has the MPFR library installed on them. They should not need it because no Bioconductor package conntains code that needs to be compiled and linked against it. I hope we can avoid embarking on the adventure of installing these libraries on oaxaca that are only needed until CRAN makes Mac binary packages available for r-devel. So in the meantime I'd say please ignore that error on oaxaca. Hope that's ok. Thanks for your comprehension. Cheers, H. On 10/26/2016 05:51 AM, Francesco Del Carratore wrote:
Hi All, I just noticed that there is an error in build report of the development version of my package ( http://bioconductor.org/checkResults/3.5/bioc-LATEST/RankProd/oaxaca-install.html ). There are no problems for the release version of the package, apparently the dependencies "Rmpfr" and "gmp" are not installed in oaxaca. Is it possible to add them? Many thanks, Francesco
-- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
