Re: [Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

[Martin Morgan]

On 09/21/2016 06:06 AM, Moritz Gerstung wrote:
Hi Dan
Has this problem problem resurrected?

I see many packages depending on zlibbioc fail, including gage, Rhtslib and 
deepSNV.

http://bioconductor.org/checkResults/devel/bioc-LATEST/gage/moscato1-install.html

The situation has improved but is not fixed across the board. Once 
zlibbioc (or another package at the root of a large hierarchy) fails, 
then the build on windows looks terrible.

Martin


Cheers

Moritz


On 1 Jun 2016, at 20:40, Dan Tenenbaum <dtene...@fredhutch.org> wrote:

It's a problem on the server itself. It will not be present in today's build 
report which should be up in half an hour or so.

This is an intermittent problem, not a continuous one.

Dan


----- Original Message -----
From: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hart...@nih.gov>
To: "Dan Tenenbaum" <dtene...@fredhutch.org>, "Monther Alhamdoosh" 
<m.hamdo...@gmail.com>, "bioc-devel"
<bioc-devel@r-project.org>
Sent: Wednesday, June 1, 2016 12:11:27 PM
Subject: RE: [Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

It looks like the zlibbioc package still won't load on moscato2. This is causing
something a ton of packages to fail at build (almost half?).

Does anyone have any idea what the issue is? Is it a problem with a patch to the
zlibbioc package, or a problem on the server itself?

-Steve

-----Original Message-----
From: Dan Tenenbaum [mailto:dtene...@fredhutch.org]
Sent: Thursday, May 26, 2016 9:03 PM
To: Monther Alhamdoosh; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

It's an as yet unknown problem with the build system. It's very likely that it
will resolve itself in tonight's builds.

Dan


On May 26, 2016 5:04:43 PM PDT, Monther Alhamdoosh <m.hamdo...@gmail.com> wrote:
Hi developers,

Our package named EGSEA seems to fail to be built on Windows as it
depends on "gage" which depends on zlibbioc. The problem appears in the
release branch and not in the devel branch.

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
vI[[i]])
:

there is no package called 'zlibbioc'

ERROR: lazy loading failed for package 'gage'

Cheers,
Monther

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