If you add a sessionInfo() section to your document (which I highly recommend) you'll probably realize the two versions are using different versions of BiocStyle (anything in devel uses BiocStyle level). The default layout is changing, and I am sure comments or bug reports are welcome. For example, as rendered right now I would agree the TOC sucks.
Best, Kasper On Fri, Jul 15, 2016 at 9:53 PM, Anand MT <anand...@hotmail.com> wrote: > Hi all, > My package 'maftools' finally found its homepage today. But when I checked > the vignette, it has been shrunken. It appears to be html vignette is > center aligned rather than left aligned. It makes things cluttered and and > toc looks messy. > Vignette is here: > http://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html > When I build it manually on my computer with devtools::build_vignettes() > it looks like this. http://poisonalien.github.io - A much cleaner look. > Do I need to change any thing in markdown file? > Meta data on my vignette markdown looks like this. > ---title: "maftools : Summarize, Analyze and Visualize MAF files"author: > "Anand Mayakonda"date: "`r Sys.Date()`"output: > BiocStyle::html_document2vignette: > %\VignetteIndexEntry{Summarize, > Analyze and Visualize MAF files} %\VignetteEngine{knitr::rmarkdown} > %\VignetteEncoding{UTF-8}--- > > Thank you. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
