----- Original Message -----
> From: "Thomas Dybdal Pedersen" <thomas...@gmail.com>
> To: "Dan Tenenbaum" <dtene...@fredhutch.org>
> Cc: bioc-devel@r-project.org
> Sent: Thursday, September 3, 2015 8:25:36 AM
> Subject: Re: [Bioc-devel] BiocCheck required import
>
> Sure, sorry. Its available on GitHub at thomasp85/FindMyFriends
>
Thanks. OK, this is a bug in BiocCheck. It's not immediately clear to me what
the best way is to fix it.
So in the meantime you can just ignore this part of the output of BiocCheck.
Thanks,
Dan
> > Den 03/09/2015 kl. 16.57 skrev Dan Tenenbaum
> > <dtene...@fredhutch.org>:
> >
> >
> >
> > ----- Original Message -----
> >> From: "Dan Tenenbaum" <dtene...@fredhutch.org>
> >> To: "Thomas Lin Pedersen" <thomas...@gmail.com>
> >> Cc: bioc-devel@r-project.org
> >> Sent: Thursday, September 3, 2015 7:55:42 AM
> >> Subject: Re: [Bioc-devel] BiocCheck required import
> >>
> >> What's the name of the package?
> >
> > I mean, is the source available somewhere?
> > Dan
> >
> >
> >> Dan
> >>
> >>
> >> ----- Original Message -----
> >>> From: "Thomas Lin Pedersen" <thomas...@gmail.com>
> >>> To: bioc-devel@r-project.org
> >>> Sent: Thursday, September 3, 2015 1:03:42 AM
> >>> Subject: [Bioc-devel] BiocCheck required import
> >>>
> >>> I’m polishing up a package for release and gets this “REQUIRED”
> >>> message from BiocCheck that kinds of baffles me:
> >>>
> >>> * REQUIRED: Packages (IRanges, Biostrings) which provide
> >>> reverse,
> >>> reverse (used in trailsToGraph, trailsToGraph) should be
> >>> imported
> >>> in the NAMESPACE file, otherwise packages that import
> >>> FindMyFriends could fail.
> >>>
> >>> This is the source code for trailsToGraph:
> >>>
> >>> trailsToGraph <- function(trails) {
> >>> trails <- unlist(lapply(trails, function(x) c(x, NA)))
> >>> edges <- data.frame(from = trails[-length(trails)], to =
> >>> trails[-1])
> >>> edges <- edges[!is.na(edges$from) & !is.na(edges$to),]
> >>> edges <- edges %>%
> >>> group_by(from, to) %>%
> >>> summarise(weight = length(from))
> >>> graph_from_data_frame(edges)
> >>> }
> >>>
> >>> I do not use reverse() anywhere in my code. Is this a bug in
> >>> BiocCheck or are there some requirements for imports with
> >>> packages
> >>> that shares symbols, even though these symbols are not used?
> >>>
> >>> best
> >>>
> >>> Thomas
> >>> [[alternative HTML version deleted]]
> >>>
> >>> _______________________________________________
> >>> Bioc-devel@r-project.org mailing list
> >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> >> _______________________________________________
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
>
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
