----- Original Message -----
> From: "Dan Tenenbaum" <dtene...@fredhutch.org>
> To: "Thomas Lin Pedersen" <thomas...@gmail.com>
> Cc: bioc-devel@r-project.org
> Sent: Thursday, September 3, 2015 7:55:42 AM
> Subject: Re: [Bioc-devel] BiocCheck required import
>
> What's the name of the package?
I mean, is the source available somewhere?
Dan
> Dan
>
>
> ----- Original Message -----
> > From: "Thomas Lin Pedersen" <thomas...@gmail.com>
> > To: bioc-devel@r-project.org
> > Sent: Thursday, September 3, 2015 1:03:42 AM
> > Subject: [Bioc-devel] BiocCheck required import
> >
> > I’m polishing up a package for release and gets this “REQUIRED”
> > message from BiocCheck that kinds of baffles me:
> >
> > * REQUIRED: Packages (IRanges, Biostrings) which provide
> > reverse,
> > reverse (used in trailsToGraph, trailsToGraph) should be
> > imported
> > in the NAMESPACE file, otherwise packages that import
> > FindMyFriends could fail.
> >
> > This is the source code for trailsToGraph:
> >
> > trailsToGraph <- function(trails) {
> > trails <- unlist(lapply(trails, function(x) c(x, NA)))
> > edges <- data.frame(from = trails[-length(trails)], to =
> > trails[-1])
> > edges <- edges[!is.na(edges$from) & !is.na(edges$to),]
> > edges <- edges %>%
> > group_by(from, to) %>%
> > summarise(weight = length(from))
> > graph_from_data_frame(edges)
> > }
> >
> > I do not use reverse() anywhere in my code. Is this a bug in
> > BiocCheck or are there some requirements for imports with packages
> > that shares symbols, even though these symbols are not used?
> >
> > best
> >
> > Thomas
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
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