On 23 March 2015 09:46, Kevin Rue-Albrecht wrote: > Hi Dan, all > > Maybe a silly question, but: where is the R-alpha 3.2.0 ?
>From the r-project.org page, choose 'download R', your local mirror and 'R alpha and beta releases': Using the Cambridge CRAN mirror http://mirrors.ebi.ac.uk/CRAN/src/base-prerelease/ Or, closer to you http://ftp.heanet.ie/mirrors/cran.r-project.org/ > So far, I have only pushed to the devel branch (3.1.x), hoping that all my > commits (most recent: 19 Mar) will be integrated into the release version > (3.2.0). > This is only my second release cycle. I remember that the first time, > bioc-sync > <https://github.com/kevinrue/GOexpress/commits/master?author=bioc-sync> > updated the release number, but I haven't seen that happen yet in either > the release or the devel branches. That will be done by the Bioc team as part of the release. > Is there any other place I should think of committing/pushing changes if I > spot a typo/bug in the next few days? Keep on committing your changes to the svn server (directly or via the git-svn bridge), and you'll be fine. Best wishes, Laurent > Thanks a million ! > Kevin > > > On 22 March 2015 at 18:57, Dan Tenenbaum <dtene...@fredhutch.org> wrote: > >> >> >> ----- Original Message ----- >> > From: "Vincent Carey" <st...@channing.harvard.edu> >> > To: "Eric Frichot" <eric.fric...@gmail.com> >> > Cc: bioc-devel@r-project.org >> > Sent: Sunday, March 22, 2015 11:42:52 AM >> > Subject: Re: [Bioc-devel] development vs release version >> > >> > On Sun, Mar 22, 2015 at 2:27 PM, Eric Frichot >> > <eric.fric...@gmail.com> >> > wrote: >> > >> > > Ok. Thanks for your help. It worked with the r-devel >> > > >> > > I assume that my package will be available with the current version >> > > of R >> > > after the next bioconductor release ? >> > > >> > > >> > The next Bioconductor release will follow on the transition of >> > R-release/R-patched to >> > the 3.2.x series. >> > >> > >> > > If I add a new version for my package, after the release, people >> > > will also >> > > have to install the r-devel to access this new version ? >> > > >> > > >> > The current R-devel, 3.2.x, will be the released version in a couple >> > of >> > weeks. >> >> >> Actually, R-devel is currently version 3.3.0. You should not use this >> version, instead you should use what's currently R-alpha (3.2.0). >> >> >> > That is >> > what folks will have to use to get your package in the release >> > version. >> > Those using >> > R-devel later on can get the devel version of your package as it >> > evolves. >> > >> > Some relevant concepts are at >> > >> > http://master.bioconductor.org/developers/how-to/version-numbering/ >> > >> > but ... there is likely a more transparent discussion of the >> > release/devel >> > distinctions >> > somewhere that I am not finding currently. If questions remain >> > please let >> > us know. >> > >> >> It's discussed a bit at >> http://bioconductor.org/developers/how-to/source-control/ under "where to >> commit. >> >> See also http://bioconductor.org/developers/package-submission/#acceptance >> . >> >> Dan >> >> >> >> > >> > > Thanks, >> > > >> > > Eric Frichot >> > > >> > > >> > > On Sun, Mar 22, 2015 at 7:01 PM Vincent Carey >> > > <st...@channing.harvard.edu> >> > > wrote: >> > > >> > >> The message means that you should use R-devel to get your package. >> > >> R 3.1.3 is currently regarded as R-patched. >> > >> >> > >> On Sun, Mar 22, 2015 at 1:44 PM, Eric Frichot >> > >> <eric.fric...@gmail.com> >> > >> wrote: >> > >> >> > >>> Hi everyone, >> > >>> >> > >>> I am new in the bioconductor community. I just finished the >> > >>> bioconductor >> > >>> review of my package called LEA. By the way, all your feedbacks >> > >>> are more >> > >>> than welcome about it. >> > >>> >> > >>> I am not sure to understand how the release of a new version >> > >>> works in >> > >>> bioconductor. I have few questions you may help me with. >> > >>> >> > >>> I just downloaded my package through bioconductor. So, it is >> > >>> under >> > >>> development. I tried to install my package using biocLite >> > >>> function. I got >> > >>> the error message >> > >>> >> > >>> package ‘LEA’ is not available (for R version 3.1.3) >> > >>> >> > >>> Does it mean that I have to wait the next bioconductor release ? >> > >>> >> > >>> If it is the case, imagine that I add new features for my >> > >>> package, do I >> > >>> have to wait the next release (every 6 month) for these features >> > >>> to be >> > >>> available ? >> > >>> >> > >>> Thanks a lot for your help, >> > >>> >> > >>> Eric Frichot >> > >>> >> > >>> [[alternative HTML version deleted]] >> > >>> >> > >>> _______________________________________________ >> > >>> Bioc-devel@r-project.org mailing list >> > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > >>> >> > >> >> > >> >> > >> > [[alternative HTML version deleted]] >> > >> > _______________________________________________ >> > Bioc-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> -- Laurent Gatto http://cpu.sysbiol.cam.ac.uk/ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
