Hi Dan, all Maybe a silly question, but: where is the R-alpha 3.2.0 ?
So far, I have only pushed to the devel branch (3.1.x), hoping that all my commits (most recent: 19 Mar) will be integrated into the release version (3.2.0). This is only my second release cycle. I remember that the first time, bioc-sync <https://github.com/kevinrue/GOexpress/commits/master?author=bioc-sync> updated the release number, but I haven't seen that happen yet in either the release or the devel branches. Is there any other place I should think of committing/pushing changes if I spot a typo/bug in the next few days? Thanks a million ! Kevin On 22 March 2015 at 18:57, Dan Tenenbaum <dtene...@fredhutch.org> wrote: > > > ----- Original Message ----- > > From: "Vincent Carey" <st...@channing.harvard.edu> > > To: "Eric Frichot" <eric.fric...@gmail.com> > > Cc: bioc-devel@r-project.org > > Sent: Sunday, March 22, 2015 11:42:52 AM > > Subject: Re: [Bioc-devel] development vs release version > > > > On Sun, Mar 22, 2015 at 2:27 PM, Eric Frichot > > <eric.fric...@gmail.com> > > wrote: > > > > > Ok. Thanks for your help. It worked with the r-devel > > > > > > I assume that my package will be available with the current version > > > of R > > > after the next bioconductor release ? > > > > > > > > The next Bioconductor release will follow on the transition of > > R-release/R-patched to > > the 3.2.x series. > > > > > > > If I add a new version for my package, after the release, people > > > will also > > > have to install the r-devel to access this new version ? > > > > > > > > The current R-devel, 3.2.x, will be the released version in a couple > > of > > weeks. > > > Actually, R-devel is currently version 3.3.0. You should not use this > version, instead you should use what's currently R-alpha (3.2.0). > > > > That is > > what folks will have to use to get your package in the release > > version. > > Those using > > R-devel later on can get the devel version of your package as it > > evolves. > > > > Some relevant concepts are at > > > > http://master.bioconductor.org/developers/how-to/version-numbering/ > > > > but ... there is likely a more transparent discussion of the > > release/devel > > distinctions > > somewhere that I am not finding currently. If questions remain > > please let > > us know. > > > > It's discussed a bit at > http://bioconductor.org/developers/how-to/source-control/ under "where to > commit. > > See also http://bioconductor.org/developers/package-submission/#acceptance > . > > Dan > > > > > > > > Thanks, > > > > > > Eric Frichot > > > > > > > > > On Sun, Mar 22, 2015 at 7:01 PM Vincent Carey > > > <st...@channing.harvard.edu> > > > wrote: > > > > > >> The message means that you should use R-devel to get your package. > > >> R 3.1.3 is currently regarded as R-patched. > > >> > > >> On Sun, Mar 22, 2015 at 1:44 PM, Eric Frichot > > >> <eric.fric...@gmail.com> > > >> wrote: > > >> > > >>> Hi everyone, > > >>> > > >>> I am new in the bioconductor community. I just finished the > > >>> bioconductor > > >>> review of my package called LEA. By the way, all your feedbacks > > >>> are more > > >>> than welcome about it. > > >>> > > >>> I am not sure to understand how the release of a new version > > >>> works in > > >>> bioconductor. I have few questions you may help me with. > > >>> > > >>> I just downloaded my package through bioconductor. So, it is > > >>> under > > >>> development. I tried to install my package using biocLite > > >>> function. I got > > >>> the error message > > >>> > > >>> package ‘LEA’ is not available (for R version 3.1.3) > > >>> > > >>> Does it mean that I have to wait the next bioconductor release ? > > >>> > > >>> If it is the case, imagine that I add new features for my > > >>> package, do I > > >>> have to wait the next release (every 6 month) for these features > > >>> to be > > >>> available ? > > >>> > > >>> Thanks a lot for your help, > > >>> > > >>> Eric Frichot > > >>> > > >>> [[alternative HTML version deleted]] > > >>> > > >>> _______________________________________________ > > >>> Bioc-devel@r-project.org mailing list > > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > >>> > > >> > > >> > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Kévin RUE-ALBRECHT Wellcome Trust Computational Infection Biology PhD Programme University College Dublin Ireland http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
