Hi everyone,
Initially the keepStandardChromosomes required users to specify 3 arguments
( the Seqinfo object, the species and the Style)
I have now implemented it to work only on the Seqinfo object. (A species
argument can be specified
optionally ) Hope that helps.
>gr <- GRanges(c("chr1", "chr1_gl000192_random", "chrM", "chr1"),
+ IRanges(1:4, width=3))
>keepStandardChromosomes(gr)
GRanges with 3 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr1 [1, 3] *
[2] chrM [3, 5] *
[3] chr1 [4, 6] *
---
seqlengths:
chrM chr1
NA NA
--
Thanks and Regards,
Sonali
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