On Wed, Feb 12, 2014 at 7:59 AM, Michael Lawrence <lawrence.mich...@gene.com > wrote:
> This is a nice suggestion. What about integration with BiocParallel? > > Yep, makes good sense. Since there is IO involved, one needs to be a bit careful about parallel ops, but I suspect that moderate parallel operation would be useful. > Michael > > > On Wed, Feb 12, 2014 at 1:53 AM, Sean Davis <sdav...@mail.nih.gov> wrote: > > > It seems that the coverage method for BamFile() reads the entire BAM file > > into memory and then calls coverage. Is there a coverage method for > > BamFiles that does not read the entire BAM file into memory first? If > not, > > does it make sense to augment the BamFile coverage method to do so in > > chunks? It is easy enough to write code to do so and there is even an > > example in the GenomicRanges HowTos, but having the method handle the use > > case would simplify matters just a bit. > > > > Thanks, > > Sean > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
