This is a nice suggestion. What about integration with BiocParallel? Michael
On Wed, Feb 12, 2014 at 1:53 AM, Sean Davis <sdav...@mail.nih.gov> wrote: > It seems that the coverage method for BamFile() reads the entire BAM file > into memory and then calls coverage. Is there a coverage method for > BamFiles that does not read the entire BAM file into memory first? If not, > does it make sense to augment the BamFile coverage method to do so in > chunks? It is easy enough to write code to do so and there is even an > example in the GenomicRanges HowTos, but having the method handle the use > case would simplify matters just a bit. > > Thanks, > Sean > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
