Hi Herve,
I have updated to IRanges 1.20.4 now, but unfortunately, I still encounter
an error when I try to subset a CompressedRleList or SimpleRleList with
a CompressedIRangesList or SimpleIRangesList.
Would you mind having a look at where I am going wrong ? (My two example
objects are available in the rdata object at the url shown below).
con=url("http://dl.dropboxusercontent.com/u/126180/example.rdata";)
load( con )
return_rles[ keep_ranges ]
Error in subsetListByList(x, i) (from List-class.R#205) :
cannot subscript an unnamed list-like object by a named list-like object
R version 3.0.2 (2013-09-25)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] trimPrimers_1.3.0 Rsamtools_1.14.1 Biostrings_2.30.0
[4] GenomicRanges_1.14.2 XVector_0.2.0 IRanges_1.20.4
[7] BiocGenerics_0.8.0 Defaults_1.1-1 BiocInstaller_1.12.0
[10] roxygen2_2.2.2 digest_0.6.3 devtools_1.3
loaded via a namespace (and not attached):
[1] bitops_1.0-6 brew_1.0-6 compiler_3.0.2 evaluate_0.5.1 httr_0.2
[6] memoise_0.1 RCurl_1.95-4.1 stats4_3.0.2 stringr_0.6.2 tools_3.0.2
[11] whisker_0.3-2 zlibbioc_1.8.0
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