Dear BioC developers, I am trying to subset an RleList with an IRangesList (see attached rdata object). Unfortunately, the following line fails with IRanges 1.20.0:
return_rles[keep_ranges] <- TRUE Error in subsetListByList_replace(x, i, value) : cannot subscript an unnamed list-like object by a named list-like object Unnaming the IRangesList doesn't help, either: return_rles[unname(keep_ranges)] <- TRUE Error in callNextMethod() : in processing 'callNextMethod', found a '...' in the matched call, but no corresponding '...' argument The same operation worked with IRanges 1.18.2 using the (now deprecated) seqselect method: seqselect( return_rles, keep_ranges ) <- TRUE Any hints ? Thanks, Thomas SessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.12.0 IRanges_1.20.0 BiocGenerics_0.8.0 devtools_1.3 loaded via a namespace (and not attached): [1] digest_0.6.3 evaluate_0.5.1 httr_0.2 memoise_0.1 RCurl_1.95-4.1 stats4_3.0.2 stringr_0.6.2 [8] tools_3.0.2 whisker_0.3-2
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