Ah! Super-nice! I'll test as well, when I have time. Kasper
On Thu, Aug 1, 2013 at 3:34 PM, Hector Corrada Bravo <hcorr...@gmail.com>wrote: > This is not tested, but... > > GIntervalTree extends GenomicRanges so, in principle, can be used in the > rowData slot of SummarizedExperiment. I tried to make GIntervalTree support > as much of the GenomicRanges interface as I could so this may work already > for overlap queries where the SummarizedExperiment object is the subject. > I'll test this soon and let you know. > > > On Thu, Aug 1, 2013 at 3:12 PM, Kasper Daniel Hansen < > kasperdanielhan...@gmail.com> wrote: > >> Now that we have GIntervalTree, I am really interested in a >> SummarizedExperiment that stores its index in a slot, so it can be >> indexed >> once. I am sure other people are greedily eyeing this as well. Either >> changing the class or extending it. >> >> Unfortunately, I will not have time to work on this for some weeks, but I >> wanted to put the idea out there. >> >> Best, >> Kasper >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
