This is not tested, but...
GIntervalTree extends GenomicRanges  so, in principle, can be used in the rowData slot of SummarizedExperiment. I tried to make GIntervalTree support as much of the GenomicRanges interface as I could so this may work already for overlap queries where the SummarizedExperiment object is the subject. I'll test this soon and let you know. On Thu, Aug 1, 2013 at 3:12 PM, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> wrote: > Now that we have GIntervalTree, I am really interested in a > SummarizedExperiment that stores its index in a slot, so it can be indexed > once. I am sure other people are greedily eyeing this as well. Either > changing the class or extending it. > Unfortunately, I will not have time to work on this for some weeks, but I > wanted to put the idea out there. > Best, > Kasper > [[alternative HTML version deleted]] > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]]
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