On Nov 14, 2012, at 9:16 AM, Martin Morgan wrote:
> On 11/13/2012 02:19 PM, Richard Friedman wrote:
>
> I think this is at the root of your problem. It implies that RCurl was not
> installed correctly. How did you install it, and if not using biocLite, what
> does
>
> source("http://bioconductor.org/biocLite.R";)
> biocLite("RCurl")
>
> say (in full)?
>
> Martin
>
Martin,
Here is the output. Although easyRNASeq apparently worked, it seems
that there is
still an Rcurl problem.
####################################################################################
> source("http://bioconductor.org/biocLite.R";)
> biocLite("RCurl")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.9.4), R version 2.16.0.
Installing package(s) 'RCurl'
There is a binary version available (and will be installed) but the source
version is later:
binary source
RCurl 1.95-0.1.2 1.95-3
trying URL
'http://bioconductor.org/packages/2.12/extra/bin/macosx/leopard/contrib/2.16/RCurl_1.95-0.1.2.tgz'
Content type 'application/x-gzip' length 713904 bytes (697 Kb)
opened URL
==================================================
downloaded 697 Kb
The downloaded binary packages are in
/var/folders/9d/pv_lg9dx2s53pqh37v5ln0xs5pvd_d/T//RtmpxWFrfO/downloaded_packages
>
>
Loading required package: bitops
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so,
6): Library not loaded:
/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so
Reason: image not found
Error: package or namespace load failed for RCurl
>
###############################################################################################
Should this be fixed before I try easyRNAseq?
Thanks and best wishes,
Rich
> --
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
>
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793
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