On 09/23/13 18:17, Jing Yu wrote:
I don't know the answer but... it sounds like NCBI's BLAST to me, which compares nucleotide or protein sequences. NCBI's FTP site provides local BLAST binaries, and bioperl offers some convenient tools to implement it.
That looks like server-side software, callable via a WWW UI and/or Perl modules (?).
Where is the design documentation for BLAST -- especially the hashing algorithms?
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