Question #703081 on Yade changed:
https://answers.launchpad.net/yade/+question/703081

    Status: Open => Answered

Jan Stránský proposed the following answer:
Hello,

> sp.load('packtest_rMean0.0012_sig-100.txt')

please provide a MWE [1].

read the documentation [2].
Probably you should use volume argument. Otherwise it assumes volume of 
enclosing axis aligned box.
So basically you have same volume, but less particles, so the resulting higher 
porosity is reasonable.

Cheers
Jan

[1] https://www.yade-dem.org/wiki/Howtoask
[2] https://yade-dem.org/doc/yade.utils.html#yade._utils.porosity

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