Hello Santhosh--

> 
> No I did not load a psf before I loaded the structure.
> 
> Should I make a psf file using psfGen [or some tool] and then use
> initCoords? 

Well, I think you can simply use protocol.loadPDB instead of the
two-step initStruct/initCoords and do without a psf.

best regards--
Charles
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