I found some more information. The issue does not seem to be caused by NSIS wrapper but by fact that original .exe name is different than what Burn expects.
New STR are: - Build BS as "setup.exe" - Rename BS to "installer.exe" - Run install from "installer.exe" - Let .NET prereq be installed - Reboot Now continuation fails with error mentioned in first post "Failed to resolve source for file: C:\setup.exe, error: 0x80070002.". If I don't rename "setup.exe" to "installer.exe" it works. So it seems that Burn has issues if you rename original built file and install flow contains a reboot. It's probably because generated BurnManifest contains: <Container Id="WixAttachedContainer" FileSize="83859245" Hash="11D22668B518B8EF8B246BD9298058B88F82790C" FilePath="setup.exe" ... /> and this value is used after reboot. -- View this message in context: http://windows-installer-xml-wix-toolset.687559.n2.nabble.com/Failed-to-extract-payloads-from-container-after-reboot-continuation-tp7600462p7600487.html Sent from the wix-users mailing list archive at Nabble.com. ------------------------------------------------------------------------------ _______________________________________________ WiX-users mailing list WiX-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/wix-users