Thanks Phill for the response. 

 After adding the xmlns="http://schemas.microsoft.com/wix/2006/wi"; 
xmlns:netfx="http://schemas.microsoft.com/wix/NetFxExtension";

in <Include> element of the WiX include file(wxi) build succeeded.

<?xml version="1.0" encoding="utf-8"?>
<Include xmlns="http://schemas.microsoft.com/wix/2006/wi";
xmlns:netfx="http://schemas.microsoft.com/wix/NetFxExtension";>

    <Component Id="cmp_WTSERVERLIB.DLL" Guid="*">
      <File Id="file_WTSERVERLIB.DLL" Name="WTServerLib.dll" KeyPath="yes"
Vital="yes">
        <netfx:NativeImage Id="ngen_WTSERVERLIB.DLL" Platform="all"
Priority="0" AppBaseDirectory="INSTALLDIR"/>
      </File>
    </Component>
</Include>

Thanks,
Uday



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