I know that this is a very elementary question since I'm new to this, but could 
someone tell what lines of code I would add to a WXS file to reference it to 
one containing Fragments.

I have a Product.wxs file and another wxs file named Directory.wxs which 
contains a bunch of Fragments. How can I tell the Product.wxs file to use the 
Directory.wxs file? Below is the code from the Product.wxs file.

The situation is that when the automated build is happening the MSI file is not 
including all of the necessary files for the program to work.

<?xml version="1.0" encoding="UTF-8"?>
<Wix xmlns="http://schemas.microsoft.com/wix/2006/wi";>

   <Product Id="*" UpgradeCode="{39A1B384-06D2-4C12-BB18-95641CF2F9DD}" 
Version="1.0.0.0" Language="1033" Name="Altus Client" Manufacturer="Polaris 
Wireless">
     <Package InstallerVersion="300" Compressed="no"/>
     <Media Id="1" EmbedCab="no" />
    <Directory Id="TARGETDIR" Name="SourceDir">
      <Directory Id="PROGRAMFILESFOLDER" Name="Altus Client">
        <Directory Id="APPLICATIONROOTDIRECTORY" Name="Altus Client"/>
      </Directory>
      <!-- Step 1: Define the directory structure -->
      <Directory Id="ProgramMenuFolder">
        <Directory Id="ApplicationProgramsFolder" Name="Altus Client"/>
      </Directory>
    </Directory>
       <Property Id="WIXUI_INSTALLDIR" Value="APPLICATIONROOTDIRECTORY" />
    <UIRef Id="WixUI_InstallDir" />
    <DirectoryRef Id="APPLICATIONROOTDIRECTORY">
      <Component Id="AltusClient.exe" 
Guid="{39A1B384-06D2-4C12-BB18-95641CF2F9DD}">
        <File Id="AltusClient.exe" 
Source="$(var.AltusClient.TargetDir)\AltusClient.exe" KeyPath="yes" 
Checksum="yes"/>
      </Component>
    </DirectoryRef>
<!-- Step 2: Add the shortcut to your installer package -->
    <DirectoryRef Id="ApplicationProgramsFolder">
      <Component Id="ApplicationShortcut" Guid="*">
        <Shortcut Id="ApplicationStartMenuShortcut" Name="Altus Client" 
Description="Altus Client Program" 
Target="[APPLICATIONROOTDIRECTORY]AltusClient.exe"
                  WorkingDirectory="APPLICATIONROOTDIRECTORY"/>
        <RemoveFolder Id="ApplicationProgramsFolder" On="uninstall"/>
        <RegistryValue Root="HKCU" Key="Software\Microsoft\AltusClient" 
Name="installed" Type="integer" Value="1" KeyPath="yes"/>
      </Component>
    </DirectoryRef>
    <Feature Id="AltusClient" Title="Altus Client" Level="1">
      <ComponentRef Id="AltusClient.exe" />
      <!-- Step 3: Tell WiX to install the shortcut -->
      <ComponentRef Id="ApplicationShortcut" />
    </Feature>
  </Product>

</Wix>


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