We use this...  It seems to work well for us...

    <!-- Custom Action used to setup the Application Pool for IIS on 64bit or 
32bit machines -->
    <CustomAction Id="CfgAppPools64" Return="check" Directory="TARGETDIR" 
ExeCommand="[SystemFolder]inetsrv\appcmd set apppool 
/apppool.name:&quot;XPJ&quot; /managedPipelineMode:Integrated  
/enable32BitAppOnWin64:true /managedRuntimeVersion:v4.0" />
    <CustomAction Id="CfgAppPools32" Return="check" Directory="TARGETDIR" 
ExeCommand="[SystemFolder]inetsrv\appcmd set apppool 
/apppool.name:&quot;XPJ&quot; /managedPipelineMode:Integrated  
/managedRuntimeVersion:v4.0" />

...

    <!-- Install/Uninstall Actions -->
    <InstallExecuteSequence>


      <Custom Action="CfgAppPools64" After ="InstallFinalize"><![CDATA[NOT 
Installed AND Msix64]]></Custom>
      <Custom Action="CfgAppPools32" After ="InstallFinalize"><![CDATA[NOT 
Installed AND NOT Msix64]]></Custom>
    </InstallExecuteSequence>

-----Original Message-----
From: Navid Azimi-Garakani [mailto:naz...@microsoft.com] 
Sent: Wednesday, July 27, 2011 6:18 PM
To: Adam; General discussion for Windows Installer XML toolset.
Subject: Re: [WiX-users] iis:WebAppPool "Enable 32 bit applications"

I don't see anything mentioned in IIS extension schema that would support this 
(see http://wix.sourceforge.net/manual-wix3/iis_xsd_webapppool.htm). If the 
documentation is out of date, then maybe someone can chime in. I believe you 
might need to run appcmd.exe out-of-band or directly modify 
applicationHost.config as a custom action.

Hope this helps,
Navid 

-----Original Message-----
From: Adam [mailto:cech...@yahoo.com] 
Sent: Wednesday, July 27, 2011 3:11 PM
To: General discussion for Windows Installer XML toolset.
Subject: [WiX-users] iis:WebAppPool "Enable 32 bit applications"

Greetings all,
is it possible to set the "Enable 32-Bit Applications" flag for an apppool im 
creating withing the msi ( under iis 7 ) via Wix?
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