You can specify an XSL transform to apply after heat harvests the files.
Here's what my xslt file looks like:


<?xml version="1.0" encoding="utf-8"?>
<xsl:stylesheet version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform";
    xmlns:msxsl="urn:schemas-microsoft-com:xslt"
exclude-result-prefixes="msxsl"
    xmlns:Wix="http://schemas.microsoft.com/wix/2006/wi";>

  <xsl:output method="xml" indent="no"/>

  
  <xsl:template match="@* | node()">
    <xsl:copy>
      <xsl:apply-templates select="@* | node()"/>
    </xsl:copy>
  </xsl:template>

  
  <xsl:template match="Wix:File">
    <xsl:copy>
      <xsl:attribute name="Assembly">.net</xsl:attribute>
      <xsl:apply-templates select="@* | node()"/>      
    </xsl:copy>
  </xsl:template>
</xsl:stylesheet>

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