My Paraffin tool will do what you want as well.

The idea of Paraffin: 
http://www.wintellect.com/CS/blogs/jrobbins/archive/2007/10/21/wix-a-better-tallow-paraffin.aspx

The latest version: 
http://www.wintellect.com/CS/files/folders/8198/download.aspx

Hope it helps!

John
Wintellect
http://www.wintellect.com
877-968-5528

>-----Original Message-----
>From: Jon W [mailto:know...@gmail.com]
>Sent: Tuesday, November 24, 2009 8:38 AM
>To: wix-users@lists.sourceforge.net
>Subject: Re: [WiX-users] incrementally update a .wxs file in wix v3
>
>My apologies.  There is a mallow for WiX v3 located at:
>  http://www.x2systems.com/files/mallow_v3.zip
>
>On Tue, Nov 24, 2009 at 9:31 AM, Jon W <know...@gmail.com> wrote:
>> Is there a way to incrementally update a .wxs file with newly added
>> files when using WiX v3?  I could use heat.exe to re-read the
>> directory contents to get the new files, but this changes all of the
>> previously existing file guids.
>>
>> I was hoping for something like mallow in WiX v2 that had this option:
>>    -s   source file to use for incremental synchronization (must be a
>> Wix XML file).
>>
>> Thanks,
>> Jon
>>
>
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