I suggest you break the problem down to isolate the cause:
1. Simplify the authoring to just install the web files (or simply a reduced
set) and test:
a) Install, uninstall
b) Install, upgrade, uninstall
Then flesh it out gradually...
2. Cut to the chase and use the ComPlusExtension to manage the COM+ stuff.
You're clearly already aware that using immediate CAs to modify the system is a
very bad idea. Why exactly is it 'beyond my control'??
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