The "approved" way of doing this is to launch aspnet_regiis.exe.  Some people 
have had varied success writing all the script maps by hand using WiX.

From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED]
Sent: Friday, March 02, 2007 2:43 PM
To: wix-users@lists.sourceforge.net
Subject: [WiX-users] how to set asp.net version

I am working on windows 2003.  I have created a new website using the <website> 
element.  I need to set the asp.net version for the newly created website.  Can 
anyone help?  I am using Wix version 2.0.4415.0.
TIA,
Shayla
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