I have tried that by removing the subfolder but its giving an error
import zipfile
def zipfolder():
zf =
zipfile.ZipFile('/home/praveen/job_files/seq_data/PCGENE_Format.zip')
fil =
zf.open('/home/praveen/job_files/seq_data/PCGENE_Format.zip/NPKGTS1')
print fil
error:
There is no item named
'/home/praveen/job_files/seq_data/PCGENE_Format.zip/NPKGTS1' in the archive"
On Thu, Jun 14, 2012 at 3:46 PM, Anthony <abasta...@gmail.com> wrote:
> Are there subfolders in the zipfile? I would think you would want to use
> the full name (including path) to extract/open the file, not just the
> filename:
>
> for name in zf.namelist():
> print zf.open(name)
>
> Anthony
>
>
> On Thursday, June 14, 2012 7:37:36 AM UTC-4, praveen krishna wrote:
>>
>> Hi,
>> I have found the mistake ,the problem is in opening the file.I have
>> tried in python.
>> if my code is
>> zipfile.ZipFile('/home/**praveen/job_files/seq_data/**PCGENE_Format.zip')
>> for name in zf.namelist():
>> filename = name.split('/')[-1]
>> print filename
>>
>> o7p
>> zipfolder()
>> N77CDR1K.ATD
>> NGFP_TRK.1
>> NP7C1TRK.1D
>> NPKGTS1
>>
>>
>> import zipfile
>> def zipfolder():
>> zf = zipfile.ZipFile('/home/**praveen/job_files/seq_data/**
>> PCGENE_Format.zip')
>> for name in zf.namelist():
>> filename = name.split('/')[-1]
>> raw_seq = zf.open(filename)
>> print raw_seq
>> error:
>>
>> KeyError: "There is no item named 'N77CDR1K.ATD' in the archive"
>> import zipfile
>> def zipfolder():
>> zf = zipfile.ZipFile('/home/**praveen/job_files/seq_data/**
>> PCGENE_Format.zip')
>> for name in zf.namelist():
>> filename = name.split('/')[-1]
>> raw_seq = zf.open(name)
>> print raw_seq
>>
>> o/p
>> zipfolder()
>> <zipfile.ZipExtFile object at 0x2401d10>
>> <zipfile.ZipExtFile object at 0x2401d50>
>> <zipfile.ZipExtFile object at 0x2401d10>
>> <zipfile.ZipExtFile object at 0x2401d50>
>> <zipfile.ZipExtFile object at 0x232f350>
>> I am unable to extract the entity in a file with the module zipfile.Is
>> there any possibility with this module if not can you suggest me any other
>> python module.I am attaching one of my sample file to this mail.
>>
>>
>>
>> On Tue, Jun 12, 2012 at 10:53 PM, pbreit <pbreitenb...@gmail.com> wrote:
>>
>>> Pretty hard to follow.
>>>
>>> One thing: you might need a db.commit() after rec.update_record(raw_**
>>> seq=**file_raw,processed_seq=**rev) since it's looping.
>>>
>>> Can you browse your DB to see what exactly is in it? If it's SQLite, you
>>> can use a Firefox addon:
>>> https://addons.mozilla.org/en-**US/firefox/addon/sqlite-**manager/<https://addons.mozilla.org/en-US/firefox/addon/sqlite-manager/>
>>>
>>> Or add a print statement which will output in a console somewhere:
>>>
>>> filename = name.split('/')[-1]
>>> print filename
>>>
>>>
>>>
>>
