Richard basically it's the .table files in your database folder that are creating the problem. You can set migrate=False in your DAL call on db.py before packing the application to prevent the problem, then turn it back on in your development machine. Table files is where web2py stores your table's structure to detect changes and do migrations, since the structure of the database is already going to be correct as any migration as already been done in your development machine there's no need to do it in the server and have these problems.
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