I have not dug through all the log output that you are citing, but at
least the following things are difference between your startup.sh and
jsvc command lines:

1) The value of -Djava.io.tmpdir
2) The value of -Djava.security.policy

The -Djava.security.policy value of jsvc is certainly wrong. There
must be a double equal sign there:

-Djava.security.policy==/srv/apache2/wsites/myportal/catalina/conf/catalina.policy

That is, the value starts with a '='.  See java security docs for the meaning.

Best regards,
Konstantin Kolinko

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