Best practice to deply a web app

[carlson weber filho]

I always had a question that no one had answered me in a satisfactory 
manner. We are a comapny that develop desktop applications, using 
Delphi, and now we are migrating some products to Tomcat, using Wicket. 
When I want to update our software on a client, we replace the 
executable and run some scripts on the database automatically, all the 
settings like report templates, connection settings, stays the same on 
the software folder. How would I do this on a Java-ish way? When I 
generate the .WAR file and put it on the tomcat webapps folder, it will 
overwrite all my app files, including settings and etc. What is the best 
way to do this?

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