Nope, that had little to do with the problem. 
 
I did figure out what was causing the problems.
 
1) There were two libraries that I needed to put in the widows\system32 
directory that eliminated most of the INFO: messages.
 
2) The other was that I didn't need the root directory because nothing was 
being accessed in that directory and 
    there wasn't any valid content in it, (all http is being handled by Apache) 
this caused the context[] error, null
    pointer exceptions and SSI errors (deleted root directory to solve problem).
 
3) Now the log just shows startup and/or shutdown information.
 
4) The reason I began looking in the logs in the first place was because the 
server was hanging when parts of it were trying to send mail.
        This was due to our mail server having issues with black list servers.

Thanks for you help. 

-----Original Message-----
From: André Warnier [mailto:a...@ice-sa.com] 
Sent: Friday, April 17, 2009 10:52 AM
To: Tomcat Users List
Subject: Re: catalina errors

Walter Thompson wrote:
>  
> I am running the following configuration:
>  
> Windows Server 2003
> Apache 2.2.6 front end
> Tomcat 6.0.16.0 backend for servlets
> Java 1.6.0_13-b03
> mod_SSL 2.2.6
> openSSL 0.9.8g
>  
Thanks for mentioning that. Few people do without prodding.


> The SSL Certificates are installed in Apache so I may not need to 
> enable SSL in Tomcat (now tomcat ssl is enabled).
>  
> Catalina log shows following:
>  
...
> Apr 17, 2009 8:59:48 AM org.apache.catalina.core.AprLifecycleListener
> init
> INFO: The APR based Apache Tomcat Native library which allows optimal 
> performance in production environments was not found on the
> java.library.path:
> C:\www\Tomcat6\bin;.;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WI
> ND 
> OWS;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program
> Files\ATI Technologies\ATI Control Panel;C:\Program 
> Files\Intel\DMIX;C:\www\openssl\bin;C:\www\Apache22\bin;C:\www\php5;C:
> \w 
> ww\mysql5\bin;C:\www\perl\bin;C:\PROGRA~1\CA\SHARED~1\SCANEN~1;C:\PROG
> RA ~1\CA\ETRUST~1;C:\Program Files\Executive 
> Software\Diskeeper\;C:\Program Files\java\jdk1.6.0_13;C:\Program 
> Files\java\jre6;C:\www\Tomcat6;C:\www\Tomcat6\lib
> Apr 17, 2009 8:59:48 AM org.apache.catalina.startup.Catalina load
> INFO: Initialization processed in 487 ms Apr 17, 2009 8:59:48 AM 
> org.apache.catalina.core.StandardService start
> INFO: Starting service Catalina
> Apr 17, 2009 8:59:48 AM org.apache.catalina.core.StandardEngine start
> INFO: Starting Servlet Engine: Apache Tomcat/6.0.16 Apr 17, 2009 
> 8:59:48 AM org.apache.catalina.startup.HostConfig
> deployDirectory
> SEVERE: Error deploying web application directory ROOT
> java.lang.SecurityException: Servlet of class 
> org.apache.catalina.ssi.SSIServlet is privileged and cannot be loaded 
> by this web application

Well, that sounds pretty clear.
Maybe here : http://tomcat.apache.org/tomcat-6.0-doc/config/context.html
"privileged" ?

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