Found a solution:
I had installed Tomcat through the Ubuntu Synaptic Package manager. It would
seem this was not a healthy install, because I just uninstalled it and
installed Tomcat 5.5 manually and everything worked perfectly. What the
problem was I never figured out since the install was scattered all over the
hard drive.

The only thing that bothers me now is that if I open up /var/log/ne/ne.log
in a text editor, say vi, and edit it, log4j will stop logging to the file.
I have to restart the webapp to make it start logging again. Anyone know
what might cause that?

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